Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6380 | 3' | -53.9 | NC_001847.1 | + | 31393 | 0.67 | 0.937432 |
Target: 5'- nGUcCCCGGGCGCgGGCUcgGGcuUCc -3' miRNA: 3'- cCA-GGGCUUGCGgCCGGuaCUuuAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 31372 | 0.69 | 0.846039 |
Target: 5'- cGG-CCCGggUGCCGGCgCA----GUCGu -3' miRNA: 3'- -CCaGGGCuuGCGGCCG-GUacuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 30213 | 0.72 | 0.707183 |
Target: 5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3' miRNA: 3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 29466 | 0.69 | 0.883854 |
Target: 5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3' miRNA: 3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 27806 | 0.66 | 0.946683 |
Target: 5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3' miRNA: 3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 23696 | 0.69 | 0.846039 |
Target: 5'- uGGUCCaCGAACggggcgcgGUCGGCgCA-GAGGUCGa -3' miRNA: 3'- -CCAGG-GCUUG--------CGGCCG-GUaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 21778 | 0.7 | 0.837857 |
Target: 5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3' miRNA: 3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 19611 | 0.66 | 0.958416 |
Target: 5'- cGGgCCCGAGCuCgGGCCcgGGGcgccggcGUCGg -3' miRNA: 3'- -CCaGGGCUUGcGgCCGGuaCUU-------UAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 18574 | 0.67 | 0.942177 |
Target: 5'- cGG-CCCGugUGCCGcGCCA--AAGUCGc -3' miRNA: 3'- -CCaGGGCuuGCGGC-CGGUacUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 14794 | 0.68 | 0.910064 |
Target: 5'- cGGUCCCGuuguAGCGCCgcccGGCCggGAGc--- -3' miRNA: 3'- -CCAGGGC----UUGCGG----CCGGuaCUUuagc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 14488 | 0.66 | 0.965716 |
Target: 5'- cGUCCCGGagGCGCUGGUUcuGUcGGAcUCGg -3' miRNA: 3'- cCAGGGCU--UGCGGCCGG--UA-CUUuAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 12999 | 0.66 | 0.960959 |
Target: 5'- cGUCCCGcgcggcgcccugcGCGCCGGCCGUcg---CGa -3' miRNA: 3'- cCAGGGCu------------UGCGGCCGGUAcuuuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 12014 | 0.68 | 0.897428 |
Target: 5'- uGGcUCUgGGGCGCCGGC---GAGGUCGu -3' miRNA: 3'- -CC-AGGgCUUGCGGCCGguaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 11584 | 0.67 | 0.929335 |
Target: 5'- cGGUgCCGGuugcuucuGCGCUGGCCggcgcguccucgaugGUGAGcUCGa -3' miRNA: 3'- -CCAgGGCU--------UGCGGCCGG---------------UACUUuAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 10925 | 0.66 | 0.958786 |
Target: 5'- cGG-CCCGAAUccucgGCCGGCCc--GAAUCc -3' miRNA: 3'- -CCaGGGCUUG-----CGGCCGGuacUUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 10698 | 0.67 | 0.927213 |
Target: 5'- -uUCCCGcacCGCCGGCCucgGAGGagGg -3' miRNA: 3'- ccAGGGCuu-GCGGCCGGua-CUUUagC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 10507 | 0.69 | 0.854023 |
Target: 5'- cGGcCCCGcgcuGCuGCgGGCCAUGGAG-CGg -3' miRNA: 3'- -CCaGGGCu---UG-CGgCCGGUACUUUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 5319 | 0.71 | 0.78505 |
Target: 5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3' miRNA: 3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 4230 | 0.66 | 0.96373 |
Target: 5'- cGGUgCCGGcgcGCGCCGGCac-GAGcugcgccagcagccaGUCGg -3' miRNA: 3'- -CCAgGGCU---UGCGGCCGguaCUU---------------UAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 3587 | 0.68 | 0.903865 |
Target: 5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3' miRNA: 3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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