miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 124591 0.7 0.837857
Target:  5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5'
6380 3' -53.9 NC_001847.1 + 116441 0.66 0.950951
Target:  5'- --cCCCGcGGCGCUGGCgGUGAcg-CGg -3'
miRNA:   3'- ccaGGGC-UUGCGGCCGgUACUuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 34595 0.7 0.826085
Target:  5'- aGG-CCCGGGCGCUGGCgCGgcggcgcgccgagGAAGUCc -3'
miRNA:   3'- -CCaGGGCUUGCGGCCG-GUa------------CUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 75388 0.68 0.890757
Target:  5'- cGG-CaCCGGACG-CGGCCAgcGAGUCGa -3'
miRNA:   3'- -CCaG-GGCUUGCgGCCGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 106797 0.68 0.916023
Target:  5'- cGGgggCCCGGGCGCgCGGCCccgcGggG-CGc -3'
miRNA:   3'- -CCa--GGGCUUGCG-GCCGGua--CuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 14488 0.66 0.965716
Target:  5'- cGUCCCGGagGCGCUGGUUcuGUcGGAcUCGg -3'
miRNA:   3'- cCAGGGCU--UGCGGCCGG--UA-CUUuAGC- -5'
6380 3' -53.9 NC_001847.1 + 19611 0.66 0.958416
Target:  5'- cGGgCCCGAGCuCgGGCCcgGGGcgccggcGUCGg -3'
miRNA:   3'- -CCaGGGCUUGcGgCCGGuaCUU-------UAGC- -5'
6380 3' -53.9 NC_001847.1 + 55440 0.66 0.946683
Target:  5'- cGGUCCUGcAGCGCCuggcGCCGgcgGGGcgCGc -3'
miRNA:   3'- -CCAGGGC-UUGCGGc---CGGUa--CUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 95935 0.66 0.946683
Target:  5'- --gCUCGAA-GCUGGCCAUGAccAUCGc -3'
miRNA:   3'- ccaGGGCUUgCGGCCGGUACUu-UAGC- -5'
6380 3' -53.9 NC_001847.1 + 72120 0.67 0.937432
Target:  5'- uGGUCCCGGccuucGCGCgCGGCgCGUGcug-Ca -3'
miRNA:   3'- -CCAGGGCU-----UGCG-GCCG-GUACuuuaGc -5'
6380 3' -53.9 NC_001847.1 + 70694 0.67 0.927213
Target:  5'- cGGgCCCGGG-GCUGGCCGUGGc---- -3'
miRNA:   3'- -CCaGGGCUUgCGGCCGGUACUuuagc -5'
6380 3' -53.9 NC_001847.1 + 79212 0.67 0.92174
Target:  5'- uGGgCUCGcGACGCCGGCCGc-GGAUCa -3'
miRNA:   3'- -CCaGGGC-UUGCGGCCGGUacUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 2023 0.66 0.962362
Target:  5'- aGGUuuUCCagcacGGCGCCGGCCGUGGccacgauagGGUCu -3'
miRNA:   3'- -CCA--GGGc----UUGCGGCCGGUACU---------UUAGc -5'
6380 3' -53.9 NC_001847.1 + 86725 0.67 0.927213
Target:  5'- aGUaCCCGAGCGCCGGCgAcgc-GUCc -3'
miRNA:   3'- cCA-GGGCUUGCGGCCGgUacuuUAGc -5'
6380 3' -53.9 NC_001847.1 + 62778 0.67 0.927213
Target:  5'- ---aCCGAgguGCGCuCGGCCAUGuuGGUCa -3'
miRNA:   3'- ccagGGCU---UGCG-GCCGGUACu-UUAGc -5'
6380 3' -53.9 NC_001847.1 + 32080 0.67 0.92174
Target:  5'- cGGgccCCUGGGCGCCGGgCGUcgGGGcgCGa -3'
miRNA:   3'- -CCa--GGGCUUGCGGCCgGUA--CUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 67519 0.66 0.954984
Target:  5'- cGGUCgCGGACG-CGGCCAacGAcAUCc -3'
miRNA:   3'- -CCAGgGCUUGCgGCCGGUa-CUuUAGc -5'
6380 3' -53.9 NC_001847.1 + 71874 0.68 0.916023
Target:  5'- cGG-CCgCGAGCGCgCGGCCcguUGuuGUCu -3'
miRNA:   3'- -CCaGG-GCUUGCG-GCCGGu--ACuuUAGc -5'
6380 3' -53.9 NC_001847.1 + 50834 0.66 0.950951
Target:  5'- gGGgcgcugCCCGcgccggggGGCGCUGGUgAUGAcGUCGg -3'
miRNA:   3'- -CCa-----GGGC--------UUGCGGCCGgUACUuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 27806 0.66 0.946683
Target:  5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3'
miRNA:   3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.