Results 61 - 80 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6380 | 3' | -53.9 | NC_001847.1 | + | 38946 | 0.66 | 0.954984 |
Target: 5'- cGGgCCCGGGgGCCGcgagcGCCAUGGcggCGg -3' miRNA: 3'- -CCaGGGCUUgCGGC-----CGGUACUuuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 47548 | 0.66 | 0.958786 |
Target: 5'- cGUCUCaacGGCGCCGGCCucgGUGAGcaCGg -3' miRNA: 3'- cCAGGGc--UUGCGGCCGG---UACUUuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 76573 | 0.66 | 0.954984 |
Target: 5'- cGG-CCCGcuuaGCUGGCCGgcAAGUCGa -3' miRNA: 3'- -CCaGGGCuug-CGGCCGGUacUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 32080 | 0.67 | 0.92174 |
Target: 5'- cGGgccCCUGGGCGCCGGgCGUcgGGGcgCGa -3' miRNA: 3'- -CCa--GGGCUUGCGGCCgGUA--CUUuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 86725 | 0.67 | 0.927213 |
Target: 5'- aGUaCCCGAGCGCCGGCgAcgc-GUCc -3' miRNA: 3'- cCA-GGGCUUGCGGCCGgUacuuUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 82122 | 0.7 | 0.837857 |
Target: 5'- aGG-CCCGAGCGCgcagCGGCCGccGcuGUCGg -3' miRNA: 3'- -CCaGGGCUUGCG----GCCGGUa-CuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 54380 | 0.7 | 0.812201 |
Target: 5'- cGUCCCGGuccGCGCCGGCgCGgaccAAGUCc -3' miRNA: 3'- cCAGGGCU---UGCGGCCG-GUac--UUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 5319 | 0.71 | 0.78505 |
Target: 5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3' miRNA: 3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 39752 | 0.71 | 0.775708 |
Target: 5'- uGUCCCcGGCGCCGGCCucaGAGccggCGg -3' miRNA: 3'- cCAGGGcUUGCGGCCGGua-CUUua--GC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 91712 | 0.72 | 0.723242 |
Target: 5'- gGGUCgCG-ACGCCGGCCAgcagcagcagcgcGAGGUCc -3' miRNA: 3'- -CCAGgGCuUGCGGCCGGUa------------CUUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 30213 | 0.72 | 0.707183 |
Target: 5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3' miRNA: 3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 78059 | 0.73 | 0.676655 |
Target: 5'- cGGUCCagCGcAGCGCUGGCCGccgcgcUGggGUUGa -3' miRNA: 3'- -CCAGG--GC-UUGCGGCCGGU------ACuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 2345 | 0.75 | 0.573767 |
Target: 5'- cGGcUCCCGccGCGCCGGCCcgGccgcGUCGg -3' miRNA: 3'- -CC-AGGGCu-UGCGGCCGGuaCuu--UAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 78615 | 0.75 | 0.533371 |
Target: 5'- aGGUCgCCGAGagcgaGCgGGCCGUGAAG-CGg -3' miRNA: 3'- -CCAG-GGCUUg----CGgCCGGUACUUUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 107017 | 1.12 | 0.002858 |
Target: 5'- aGGUCCCGAACGCCGGCCAUGAAAUCGg -3' miRNA: 3'- -CCAGGGCUUGCGGCCGGUACUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 11584 | 0.67 | 0.929335 |
Target: 5'- cGGUgCCGGuugcuucuGCGCUGGCCggcgcguccucgaugGUGAGcUCGa -3' miRNA: 3'- -CCAgGGCU--------UGCGGCCGG---------------UACUUuAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 34393 | 0.67 | 0.932444 |
Target: 5'- gGGgcgaCCUGGACcCCGGCCccGAGAgcUCGg -3' miRNA: 3'- -CCa---GGGCUUGcGGCCGGuaCUUU--AGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 78781 | 0.67 | 0.932444 |
Target: 5'- cGGcUCCUugaGGCGCCGGCcCGUGGccauGUCGc -3' miRNA: 3'- -CC-AGGGc--UUGCGGCCG-GUACUu---UAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 92783 | 0.67 | 0.932444 |
Target: 5'- --cCCCGAgGCGCUGGCCAccGAGGaCGu -3' miRNA: 3'- ccaGGGCU-UGCGGCCGGUa-CUUUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 31393 | 0.67 | 0.937432 |
Target: 5'- nGUcCCCGGGCGCgGGCUcgGGcuUCc -3' miRNA: 3'- cCA-GGGCUUGCGgCCGGuaCUuuAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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