miRNA display CGI


Results 81 - 100 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 54380 0.7 0.812201
Target:  5'- cGUCCCGGuccGCGCCGGCgCGgaccAAGUCc -3'
miRNA:   3'- cCAGGGCU---UGCGGCCG-GUac--UUUAGc -5'
6380 3' -53.9 NC_001847.1 + 5319 0.71 0.78505
Target:  5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3'
miRNA:   3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 39752 0.71 0.775708
Target:  5'- uGUCCCcGGCGCCGGCCucaGAGccggCGg -3'
miRNA:   3'- cCAGGGcUUGCGGCCGGua-CUUua--GC- -5'
6380 3' -53.9 NC_001847.1 + 91712 0.72 0.723242
Target:  5'- gGGUCgCG-ACGCCGGCCAgcagcagcagcgcGAGGUCc -3'
miRNA:   3'- -CCAGgGCuUGCGGCCGGUa------------CUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 30213 0.72 0.707183
Target:  5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3'
miRNA:   3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 78059 0.73 0.676655
Target:  5'- cGGUCCagCGcAGCGCUGGCCGccgcgcUGggGUUGa -3'
miRNA:   3'- -CCAGG--GC-UUGCGGCCGGU------ACuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 2345 0.75 0.573767
Target:  5'- cGGcUCCCGccGCGCCGGCCcgGccgcGUCGg -3'
miRNA:   3'- -CC-AGGGCu-UGCGGCCGGuaCuu--UAGC- -5'
6380 3' -53.9 NC_001847.1 + 78615 0.75 0.533371
Target:  5'- aGGUCgCCGAGagcgaGCgGGCCGUGAAG-CGg -3'
miRNA:   3'- -CCAG-GGCUUg----CGgCCGGUACUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 21778 0.7 0.837857
Target:  5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5'
6380 3' -53.9 NC_001847.1 + 50026 0.7 0.837857
Target:  5'- gGGcCCCGGGCGC--GCCGUGAuGAUCa -3'
miRNA:   3'- -CCaGGGCUUGCGgcCGGUACU-UUAGc -5'
6380 3' -53.9 NC_001847.1 + 31372 0.69 0.846039
Target:  5'- cGG-CCCGggUGCCGGCgCA----GUCGu -3'
miRNA:   3'- -CCaGGGCuuGCGGCCG-GUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 71874 0.68 0.916023
Target:  5'- cGG-CCgCGAGCGCgCGGCCcguUGuuGUCu -3'
miRNA:   3'- -CCaGG-GCUUGCG-GCCGGu--ACuuUAGc -5'
6380 3' -53.9 NC_001847.1 + 14794 0.68 0.910064
Target:  5'- cGGUCCCGuuguAGCGCCgcccGGCCggGAGc--- -3'
miRNA:   3'- -CCAGGGC----UUGCGG----CCGGuaCUUuagc -5'
6380 3' -53.9 NC_001847.1 + 3587 0.68 0.903865
Target:  5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3'
miRNA:   3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 52929 0.68 0.897428
Target:  5'- gGGgcgCCCgcGAAgGCCGuGCCGguuaagGAAGUCGa -3'
miRNA:   3'- -CCa--GGG--CUUgCGGC-CGGUa-----CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 41521 0.68 0.897428
Target:  5'- cGUCCgCGGccGCGCCGGCCG-GAGc--- -3'
miRNA:   3'- cCAGG-GCU--UGCGGCCGGUaCUUuagc -5'
6380 3' -53.9 NC_001847.1 + 12014 0.68 0.897428
Target:  5'- uGGcUCUgGGGCGCCGGC---GAGGUCGu -3'
miRNA:   3'- -CC-AGGgCUUGCGGCCGguaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 29466 0.69 0.883854
Target:  5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5'
6380 3' -53.9 NC_001847.1 + 58753 0.69 0.876724
Target:  5'- cGGcCCCcGGCGCCccccccgaGGCCGUGAAGaggCGa -3'
miRNA:   3'- -CCaGGGcUUGCGG--------CCGGUACUUUa--GC- -5'
6380 3' -53.9 NC_001847.1 + 91762 0.69 0.851649
Target:  5'- cGGUCCgCGGgcgcuccgucggcgGCGCUGGCCGcGGAcgcuucGUCGg -3'
miRNA:   3'- -CCAGG-GCU--------------UGCGGCCGGUaCUU------UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.