Results 101 - 106 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6380 | 3' | -53.9 | NC_001847.1 | + | 52929 | 0.68 | 0.897428 |
Target: 5'- gGGgcgCCCgcGAAgGCCGuGCCGguuaagGAAGUCGa -3' miRNA: 3'- -CCa--GGG--CUUgCGGC-CGGUa-----CUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 41521 | 0.68 | 0.897428 |
Target: 5'- cGUCCgCGGccGCGCCGGCCG-GAGc--- -3' miRNA: 3'- cCAGG-GCU--UGCGGCCGGUaCUUuagc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 12014 | 0.68 | 0.897428 |
Target: 5'- uGGcUCUgGGGCGCCGGC---GAGGUCGu -3' miRNA: 3'- -CC-AGGgCUUGCGGCCGguaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 29466 | 0.69 | 0.883854 |
Target: 5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3' miRNA: 3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 58753 | 0.69 | 0.876724 |
Target: 5'- cGGcCCCcGGCGCCccccccgaGGCCGUGAAGaggCGa -3' miRNA: 3'- -CCaGGGcUUGCGG--------CCGGUACUUUa--GC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 107017 | 1.12 | 0.002858 |
Target: 5'- aGGUCCCGAACGCCGGCCAUGAAAUCGg -3' miRNA: 3'- -CCAGGGCUUGCGGCCGGUACUUUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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