miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 125436 0.66 0.954984
Target:  5'- aGGaCCCGcgcGugGCUGGCCGgagGAcgggcgGGUCGg -3'
miRNA:   3'- -CCaGGGC---UugCGGCCGGUa--CU------UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 50834 0.66 0.950951
Target:  5'- gGGgcgcugCCCGcgccggggGGCGCUGGUgAUGAcGUCGg -3'
miRNA:   3'- -CCa-----GGGC--------UUGCGGCCGgUACUuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 34393 0.67 0.932444
Target:  5'- gGGgcgaCCUGGACcCCGGCCccGAGAgcUCGg -3'
miRNA:   3'- -CCa---GGGCUUGcGGCCGGuaCUUU--AGC- -5'
6380 3' -53.9 NC_001847.1 + 78781 0.67 0.932444
Target:  5'- cGGcUCCUugaGGCGCCGGCcCGUGGccauGUCGc -3'
miRNA:   3'- -CC-AGGGc--UUGCGGCCG-GUACUu---UAGC- -5'
6380 3' -53.9 NC_001847.1 + 92783 0.67 0.932444
Target:  5'- --cCCCGAgGCGCUGGCCAccGAGGaCGu -3'
miRNA:   3'- ccaGGGCU-UGCGGCCGGUa-CUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 31393 0.67 0.937432
Target:  5'- nGUcCCCGGGCGCgGGCUcgGGcuUCc -3'
miRNA:   3'- cCA-GGGCUUGCGgCCGGuaCUuuAGc -5'
6380 3' -53.9 NC_001847.1 + 769 0.67 0.937432
Target:  5'- cGG-CCCGccgccggcGGCGCCGGCCucgucGUCGu -3'
miRNA:   3'- -CCaGGGC--------UUGCGGCCGGuacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 77041 0.67 0.937432
Target:  5'- --cCCCG-ACGUCGGCCAUcGGAAg-- -3'
miRNA:   3'- ccaGGGCuUGCGGCCGGUA-CUUUagc -5'
6380 3' -53.9 NC_001847.1 + 18574 0.67 0.942177
Target:  5'- cGG-CCCGugUGCCGcGCCA--AAGUCGc -3'
miRNA:   3'- -CCaGGGCuuGCGGC-CGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 142 0.66 0.946683
Target:  5'- gGGcCUCGGGCcCCGGCCggGggGcCGg -3'
miRNA:   3'- -CCaGGGCUUGcGGCCGGuaCuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 934 0.66 0.946683
Target:  5'- cGGgaagCCCGAGC-CCGcGCCcgGGGA-CGa -3'
miRNA:   3'- -CCa---GGGCUUGcGGC-CGGuaCUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 66171 0.66 0.946683
Target:  5'- -cUCCCGGgcugGCGCCGGCCGc------- -3'
miRNA:   3'- ccAGGGCU----UGCGGCCGGUacuuuagc -5'
6380 3' -53.9 NC_001847.1 + 27806 0.66 0.946683
Target:  5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3'
miRNA:   3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 115299 0.71 0.794252
Target:  5'- --cCCCGGGCGCgGGCCAaGGGcgcuguGUCGa -3'
miRNA:   3'- ccaGGGCUUGCGgCCGGUaCUU------UAGC- -5'
6380 3' -53.9 NC_001847.1 + 108132 0.71 0.78505
Target:  5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3'
miRNA:   3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 77487 0.71 0.766236
Target:  5'- cGG-CCCGGccCGCCGGCCc--GAGUCGg -3'
miRNA:   3'- -CCaGGGCUu-GCGGCCGGuacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 133026 0.72 0.707183
Target:  5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3'
miRNA:   3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 102262 0.73 0.645794
Target:  5'- cGGccCCCGAGgccuCGCCGucggccGCCGUGAGGUCGa -3'
miRNA:   3'- -CCa-GGGCUU----GCGGC------CGGUACUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 105158 0.75 0.573767
Target:  5'- cGGcUCCCGccGCGCCGGCCcgGccgcGUCGg -3'
miRNA:   3'- -CC-AGGGCu-UGCGGCCGGuaCuu--UAGC- -5'
6380 3' -53.9 NC_001847.1 + 35011 0.66 0.965716
Target:  5'- cGG-CCgCGGACGUgGGCCAgcUGAcgcGGUUGa -3'
miRNA:   3'- -CCaGG-GCUUGCGgCCGGU--ACU---UUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.