Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6380 | 3' | -53.9 | NC_001847.1 | + | 67519 | 0.66 | 0.954984 |
Target: 5'- cGGUCgCGGACG-CGGCCAacGAcAUCc -3' miRNA: 3'- -CCAGgGCUUGCgGCCGGUa-CUuUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 125436 | 0.66 | 0.954984 |
Target: 5'- aGGaCCCGcgcGugGCUGGCCGgagGAcgggcgGGUCGg -3' miRNA: 3'- -CCaGGGC---UugCGGCCGGUa--CU------UUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 84362 | 0.66 | 0.954984 |
Target: 5'- uGGUCCCGAagACGCCGaGCgGgcuccgCGu -3' miRNA: 3'- -CCAGGGCU--UGCGGC-CGgUacuuuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 50490 | 0.66 | 0.953798 |
Target: 5'- cGGUCCgGccguaucuaucaacGGCGCgGGCCAgGAGuUCGc -3' miRNA: 3'- -CCAGGgC--------------UUGCGgCCGGUaCUUuAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 56887 | 0.66 | 0.953798 |
Target: 5'- cGGgCCCGccggcgacggcGACGCCGGCgggcgggugacuacCGUGAGcUCGg -3' miRNA: 3'- -CCaGGGC-----------UUGCGGCCG--------------GUACUUuAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 79092 | 0.66 | 0.950951 |
Target: 5'- uGUgCCCGuGCGCCGcGCCGUGccuGUgGa -3' miRNA: 3'- cCA-GGGCuUGCGGC-CGGUACuu-UAgC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 116441 | 0.66 | 0.950951 |
Target: 5'- --cCCCGcGGCGCUGGCgGUGAcg-CGg -3' miRNA: 3'- ccaGGGC-UUGCGGCCGgUACUuuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 50834 | 0.66 | 0.950951 |
Target: 5'- gGGgcgcugCCCGcgccggggGGCGCUGGUgAUGAcGUCGg -3' miRNA: 3'- -CCa-----GGGC--------UUGCGGCCGgUACUuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 103747 | 0.66 | 0.946683 |
Target: 5'- cGGgaagCCCGAGC-CCGcGCCcgGGGA-CGa -3' miRNA: 3'- -CCa---GGGCUUGcGGC-CGGuaCUUUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 27806 | 0.66 | 0.946683 |
Target: 5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3' miRNA: 3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 934 | 0.66 | 0.946683 |
Target: 5'- cGGgaagCCCGAGC-CCGcGCCcgGGGA-CGa -3' miRNA: 3'- -CCa---GGGCUUGcGGC-CGGuaCUUUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 142 | 0.66 | 0.946683 |
Target: 5'- gGGcCUCGGGCcCCGGCCggGggGcCGg -3' miRNA: 3'- -CCaGGGCUUGcGGCCGGuaCuuUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 95935 | 0.66 | 0.946683 |
Target: 5'- --gCUCGAA-GCUGGCCAUGAccAUCGc -3' miRNA: 3'- ccaGGGCUUgCGGCCGGUACUu-UAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 102955 | 0.66 | 0.946683 |
Target: 5'- gGGcCUCGGGCcCCGGCCggGggGcCGg -3' miRNA: 3'- -CCaGGGCUUGcGGCCGGuaCuuUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 66171 | 0.66 | 0.946683 |
Target: 5'- -cUCCCGGgcugGCGCCGGCCGc------- -3' miRNA: 3'- ccAGGGCU----UGCGGCCGGUacuuuagc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 55440 | 0.66 | 0.946683 |
Target: 5'- cGGUCCUGcAGCGCCuggcGCCGgcgGGGcgCGc -3' miRNA: 3'- -CCAGGGC-UUGCGGc---CGGUa--CUUuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 130619 | 0.66 | 0.946683 |
Target: 5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3' miRNA: 3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 41403 | 0.66 | 0.945356 |
Target: 5'- -cUCCCGGACcgcgcggucuagcaGCCGGCCGgugcgaUGcGAGUCGc -3' miRNA: 3'- ccAGGGCUUG--------------CGGCCGGU------AC-UUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 18574 | 0.67 | 0.942177 |
Target: 5'- cGG-CCCGugUGCCGcGCCA--AAGUCGc -3' miRNA: 3'- -CCaGGGCuuGCGGC-CGGUacUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 58746 | 0.67 | 0.942177 |
Target: 5'- cGG-CCCGAcagcgGCGgCGGCCGcGAcGGUCGc -3' miRNA: 3'- -CCaGGGCU-----UGCgGCCGGUaCU-UUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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