Results 21 - 40 of 767 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6380 | 5' | -67 | NC_001847.1 | + | 103779 | 0.66 | 0.390338 |
Target: 5'- gCGcCGGCaCCCGgccGGCGGGgcuucCGCCGcCGGCGg -3' miRNA: 3'- -GC-GCCG-GGGC---CCGUCC-----GCGGU-GUCGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 5784 | 0.66 | 0.390338 |
Target: 5'- gGCGucuaGCCCCGGGCccGGCaCCGCGcuuGCGc -3' miRNA: 3'- gCGC----CGGGGCCCGu-CCGcGGUGU---CGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 131263 | 0.66 | 0.390338 |
Target: 5'- cCGCGGCgCCGcGcGaCGGGcCGCCGCcGCu -3' miRNA: 3'- -GCGCCGgGGC-C-C-GUCC-GCGGUGuCGu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 59021 | 0.66 | 0.390338 |
Target: 5'- aGCGuGCgaCgGuGGCGGGUGCgGCGGCGg -3' miRNA: 3'- gCGC-CGg-GgC-CCGUCCGCGgUGUCGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 74660 | 0.66 | 0.390338 |
Target: 5'- uGCuGCgCCUGGaGCcGGCcgaGCCGCGGCAg -3' miRNA: 3'- gCGcCG-GGGCC-CGuCCG---CGGUGUCGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 4860 | 0.66 | 0.390338 |
Target: 5'- -aUGGCgCCGGGaCGGGCacaGCCAC-GCGg -3' miRNA: 3'- gcGCCGgGGCCC-GUCCG---CGGUGuCGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 76420 | 0.66 | 0.390338 |
Target: 5'- cCGcCGGaggagCCCGGGguGGCcGCgACGGUg -3' miRNA: 3'- -GC-GCCg----GGGCCCguCCG-CGgUGUCGu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 101472 | 0.66 | 0.390338 |
Target: 5'- uGCGccucuaGCCCCGcGCGGGCcgcgGCCACGcGCGc -3' miRNA: 3'- gCGC------CGGGGCcCGUCCG----CGGUGU-CGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 77388 | 0.66 | 0.390338 |
Target: 5'- aGCaGCCCCGuGGcCAGcGCGCCgaACGGg- -3' miRNA: 3'- gCGcCGGGGC-CC-GUC-CGCGG--UGUCgu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 74277 | 0.66 | 0.390338 |
Target: 5'- gCGCGGCCgcccucgcgCUGGacGCccuGGCGCCgcGCAGCGc -3' miRNA: 3'- -GCGCCGG---------GGCC--CGu--CCGCGG--UGUCGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 57994 | 0.66 | 0.390338 |
Target: 5'- gCGCGGUggCGGcGCAGGCGgCgGCGGUc -3' miRNA: 3'- -GCGCCGggGCC-CGUCCGC-GgUGUCGu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 86648 | 0.66 | 0.390338 |
Target: 5'- cCGCGccGCCCCGGaGC--GCGCCGC-GCu -3' miRNA: 3'- -GCGC--CGGGGCC-CGucCGCGGUGuCGu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 68141 | 0.66 | 0.390338 |
Target: 5'- gCGCGucuGCCCCuucuccGGCGccGCGCCGCAGCc -3' miRNA: 3'- -GCGC---CGGGGc-----CCGUc-CGCGGUGUCGu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 58210 | 0.66 | 0.390338 |
Target: 5'- gGC-GCUCCGGGCGGaucugccCGCCggGCGGCAg -3' miRNA: 3'- gCGcCGGGGCCCGUCc------GCGG--UGUCGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 28450 | 0.66 | 0.390338 |
Target: 5'- cCGCGGCgCCGcGcGaCGGGcCGCCGCcGCu -3' miRNA: 3'- -GCGCCGgGGC-C-C-GUCC-GCGGUGuCGu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 130176 | 0.66 | 0.390338 |
Target: 5'- aGCGaCCCC--GCGGGCGCC-CGGCc -3' miRNA: 3'- gCGCcGGGGccCGUCCGCGGuGUCGu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 27520 | 0.66 | 0.389546 |
Target: 5'- cCGCGGCggcggcggggacgCCCGagaacGGC-GGCGCgGCGGCu -3' miRNA: 3'- -GCGCCG-------------GGGC-----CCGuCCGCGgUGUCGu -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 83038 | 0.66 | 0.385601 |
Target: 5'- cCGCGGCCgcuagugcgcUUGGGCcgcGGCGCggccgaagagcgcaaCACGGCAg -3' miRNA: 3'- -GCGCCGG----------GGCCCGu--CCGCG---------------GUGUCGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 34454 | 0.66 | 0.384815 |
Target: 5'- aGUGGCCgCCuGGGUgcgagaaagccuccuGGGgacccccCGCCGCAGCAn -3' miRNA: 3'- gCGCCGG-GG-CCCG---------------UCC-------GCGGUGUCGU- -5' |
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6380 | 5' | -67 | NC_001847.1 | + | 41378 | 0.66 | 0.382464 |
Target: 5'- aGCGGCggCCGGGCcGcCGCCgGCAGCc -3' miRNA: 3'- gCGCCGg-GGCCCGuCcGCGG-UGUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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