miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 49752 0.67 0.840678
Target:  5'- gCGUGccGCUguACCccGUGCAGCUguacaUGCCCg -3'
miRNA:   3'- aGCAU--CGA--UGGcaCACGUCGA-----GCGGG- -5'
6381 5' -56 NC_001847.1 + 80926 0.67 0.856686
Target:  5'- cCGUGGCcGCCGUGcugGCcGaaaaUCGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACa--CGuCg---AGCGGg -5'
6381 5' -56 NC_001847.1 + 18555 0.67 0.856686
Target:  5'- -aGUAGCggggcucggugaccgGCCcGUGUGCcGCgccaaagUCGCCCa -3'
miRNA:   3'- agCAUCGa--------------UGG-CACACGuCG-------AGCGGG- -5'
6381 5' -56 NC_001847.1 + 49419 0.67 0.856686
Target:  5'- gCGcAGcCUGCCGccGUGCacuggcgcuuguGGCUCGCUCa -3'
miRNA:   3'- aGCaUC-GAUGGCa-CACG------------UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 127341 0.67 0.848782
Target:  5'- gCGgccGGCUGCCGcGgcagggGCGGCgggGCCCg -3'
miRNA:   3'- aGCa--UCGAUGGCaCa-----CGUCGag-CGGG- -5'
6381 5' -56 NC_001847.1 + 85263 0.67 0.856686
Target:  5'- aCGUA---GCCGUGcaGCAGCUCGCa- -3'
miRNA:   3'- aGCAUcgaUGGCACa-CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 54596 0.67 0.856686
Target:  5'- uUCGggGGC-GCCGUGgGCgAGCaaucCGCCCg -3'
miRNA:   3'- -AGCa-UCGaUGGCACaCG-UCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 58382 0.67 0.848782
Target:  5'- cUCGUAGCgggUGCCGgcggGCAGCa-GCUCu -3'
miRNA:   3'- -AGCAUCG---AUGGCaca-CGUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 46927 0.67 0.848782
Target:  5'- gUCGggcccgGGCUccggGCCGcGUGCGGCgaaGCCa -3'
miRNA:   3'- -AGCa-----UCGA----UGGCaCACGUCGag-CGGg -5'
6381 5' -56 NC_001847.1 + 120979 0.67 0.840678
Target:  5'- gCGUAaGCgcgGCCGUcgcccuaGCGGC-CGCCCa -3'
miRNA:   3'- aGCAU-CGa--UGGCAca-----CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 125445 0.67 0.83322
Target:  5'- gCGUGGCUgGCCGgagGacgggcgggucggcgGCAGCUCGCg- -3'
miRNA:   3'- aGCAUCGA-UGGCa--Ca--------------CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 57558 0.67 0.832382
Target:  5'- ---cGGgUGCCGccGUGCgAGCUCgGCCCg -3'
miRNA:   3'- agcaUCgAUGGCa-CACG-UCGAG-CGGG- -5'
6381 5' -56 NC_001847.1 + 121828 0.67 0.832382
Target:  5'- -gGUacAGCUcgGCCGacUGCAGCccggCGCCCg -3'
miRNA:   3'- agCA--UCGA--UGGCacACGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 93670 0.67 0.823901
Target:  5'- uUCGUGcGCaUGCCGcgcGUGCAGCUCucguUCCg -3'
miRNA:   3'- -AGCAU-CG-AUGGCa--CACGUCGAGc---GGG- -5'
6381 5' -56 NC_001847.1 + 28795 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 112687 0.67 0.856686
Target:  5'- aCGgcucCUGCCGccucUGCcGCUCGCCCg -3'
miRNA:   3'- aGCauc-GAUGGCac--ACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 9874 0.67 0.856686
Target:  5'- aCGgcucCUGCCGccucUGCcGCUCGCCCg -3'
miRNA:   3'- aGCauc-GAUGGCac--ACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 79349 0.68 0.796524
Target:  5'- cUCGcgagcAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3'
miRNA:   3'- -AGCa----UCGAUGGC-------------ACACG----------UCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 43079 0.68 0.779012
Target:  5'- -gGgcGCUGCUGgcucgGCGGCggaggCGCCCg -3'
miRNA:   3'- agCauCGAUGGCaca--CGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 20582 0.68 0.779012
Target:  5'- gUCGUAGagGCCGcUGUGUaccAGCaUGCCCu -3'
miRNA:   3'- -AGCAUCgaUGGC-ACACG---UCGaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.