miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 46313 0.7 0.700745
Target:  5'- cCGUAGC-GCCGaGcGCAGCacggcCGCCCg -3'
miRNA:   3'- aGCAUCGaUGGCaCaCGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 60075 0.7 0.700745
Target:  5'- -gGUGGCgcuagugaugGCCGUGUucguggGCAGCcuccCGCCCa -3'
miRNA:   3'- agCAUCGa---------UGGCACA------CGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 62246 0.7 0.680405
Target:  5'- cUCGUGGCgcGCCaccUGCAGCU-GCCCg -3'
miRNA:   3'- -AGCAUCGa-UGGcacACGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 50552 0.69 0.76006
Target:  5'- gCGgcGCUGCUGgaccGCGGCgUCGCCUc -3'
miRNA:   3'- aGCauCGAUGGCaca-CGUCG-AGCGGG- -5'
6381 5' -56 NC_001847.1 + 33919 0.69 0.76006
Target:  5'- cUCGgggaGGCUGgccuccCCGUGUGCAgGCcCGCCg -3'
miRNA:   3'- -AGCa---UCGAU------GGCACACGU-CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 130893 0.69 0.750406
Target:  5'- cCGacUGGCUGCUG-GcGCAGCUCGUgCCg -3'
miRNA:   3'- aGC--AUCGAUGGCaCaCGUCGAGCG-GG- -5'
6381 5' -56 NC_001847.1 + 29190 0.69 0.750406
Target:  5'- aCGU-GCUGCCGuUGcUGgGGCU-GCCCg -3'
miRNA:   3'- aGCAuCGAUGGC-AC-ACgUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 88455 0.69 0.740647
Target:  5'- cCGcgGGCcccgACCGcgcgcgcGUGCuGCUCGCCCu -3'
miRNA:   3'- aGCa-UCGa---UGGCa------CACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 118430 0.69 0.730792
Target:  5'- uUCGcUGGUgAUCGUGcucgucugcgccUGcCGGCUCGCCCg -3'
miRNA:   3'- -AGC-AUCGaUGGCAC------------AC-GUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 96567 0.69 0.720851
Target:  5'- gCGgucuGCUgGCCGUGUGCcuGggCGCCCg -3'
miRNA:   3'- aGCau--CGA-UGGCACACGu-CgaGCGGG- -5'
6381 5' -56 NC_001847.1 + 86494 0.69 0.740647
Target:  5'- aCGaGGCUGCgGgg-GCGGCggCGCCCc -3'
miRNA:   3'- aGCaUCGAUGgCacaCGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 128779 0.69 0.740647
Target:  5'- ----uGCUGCCGca-GCGGCUaCGCCCg -3'
miRNA:   3'- agcauCGAUGGCacaCGUCGA-GCGGG- -5'
6381 5' -56 NC_001847.1 + 24403 0.69 0.750406
Target:  5'- --aUGGCgGCCGUG-GCGGC-CGCCg -3'
miRNA:   3'- agcAUCGaUGGCACaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 115707 0.69 0.740647
Target:  5'- ---cGGCUGcggcCCGUGUGC-GCUUGCCg -3'
miRNA:   3'- agcaUCGAU----GGCACACGuCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 110228 0.69 0.719852
Target:  5'- aCGU-GCggGCCGUGcuaaacaUGCGcggccuGCUCGCCCg -3'
miRNA:   3'- aGCAuCGa-UGGCAC-------ACGU------CGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 3412 0.68 0.787371
Target:  5'- gUCGUagcggcGGCUcauggccacgcagGCCGccacGUGCGGCagCGCCCa -3'
miRNA:   3'- -AGCA------UCGA-------------UGGCa---CACGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 129143 0.68 0.797431
Target:  5'- aCGUGGCggucGCCGuUGUuCGGCU-GCCCc -3'
miRNA:   3'- aGCAUCGa---UGGC-ACAcGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 24938 0.68 0.806418
Target:  5'- -gGUacAGCaGCUGg--GCGGCUUGCCCg -3'
miRNA:   3'- agCA--UCGaUGGCacaCGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 73813 0.68 0.806418
Target:  5'- cCGUGGUcGCCGcGcUGCAGCggcugcgCGUCCu -3'
miRNA:   3'- aGCAUCGaUGGCaC-ACGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 79349 0.68 0.796524
Target:  5'- cUCGcgagcAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3'
miRNA:   3'- -AGCa----UCGAUGGC-------------ACACG----------UCGAGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.