miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 20582 0.68 0.779012
Target:  5'- gUCGUAGagGCCGcUGUGUaccAGCaUGCCCu -3'
miRNA:   3'- -AGCAUCgaUGGC-ACACG---UCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 86502 0.68 0.779012
Target:  5'- gCGgcGCUgcACCGUcGcGCGGCggcugggCGCCCg -3'
miRNA:   3'- aGCauCGA--UGGCA-CaCGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 43079 0.68 0.779012
Target:  5'- -gGgcGCUGCUGgcucgGCGGCggaggCGCCCg -3'
miRNA:   3'- agCauCGAUGGCaca--CGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 106225 0.68 0.787371
Target:  5'- gUCGUagcggcGGCUcauggccacgcagGCCGccacGUGCGGCagCGCCCa -3'
miRNA:   3'- -AGCA------UCGA-------------UGGCa---CACGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 3412 0.68 0.787371
Target:  5'- gUCGUagcggcGGCUcauggccacgcagGCCGccacGUGCGGCagCGCCCa -3'
miRNA:   3'- -AGCA------UCGA-------------UGGCa---CACGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 54229 0.68 0.788293
Target:  5'- gCGUGGacuguCUGCuCGUGgGCAGCgcugcgguggCGCCCg -3'
miRNA:   3'- aGCAUC-----GAUG-GCACaCGUCGa---------GCGGG- -5'
6381 5' -56 NC_001847.1 + 80859 0.68 0.788293
Target:  5'- gCGgcGCgcgucgagGCCGUccgGCAGCaCGCCCg -3'
miRNA:   3'- aGCauCGa-------UGGCAca-CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 79349 0.68 0.796524
Target:  5'- cUCGcgagcAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3'
miRNA:   3'- -AGCa----UCGAUGGC-------------ACACG----------UCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 79357 0.68 0.796524
Target:  5'- ---cAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3'
miRNA:   3'- agcaUCGAUGGC-------------ACACG----------UCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 129143 0.68 0.797431
Target:  5'- aCGUGGCggucGCCGuUGUuCGGCU-GCCCc -3'
miRNA:   3'- aGCAUCGa---UGGC-ACAcGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 18444 0.68 0.797431
Target:  5'- cCGcGGCcaGCCGUGcGguGCcgCGCCCg -3'
miRNA:   3'- aGCaUCGa-UGGCACaCguCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 24938 0.68 0.806418
Target:  5'- -gGUacAGCaGCUGg--GCGGCUUGCCCg -3'
miRNA:   3'- agCA--UCGaUGGCacaCGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 73813 0.68 0.806418
Target:  5'- cCGUGGUcGCCGcGcUGCAGCggcugcgCGUCCu -3'
miRNA:   3'- aGCAUCGaUGGCaC-ACGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 1448 0.68 0.815244
Target:  5'- gCGUGGCcACCGUGUaGCGcacguuGC-CGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACA-CGU------CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 104261 0.68 0.815244
Target:  5'- gCGUGGCcACCGUGUaGCGcacguuGC-CGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACA-CGU------CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 81362 0.68 0.815244
Target:  5'- cUCGcGGCgGCUGcgGUGCuGC-CGCCCu -3'
miRNA:   3'- -AGCaUCGaUGGCa-CACGuCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 131608 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 85949 0.67 0.823901
Target:  5'- cCGUcgcGUUGCCGUccccgcuUGCAGCggaCGCCCg -3'
miRNA:   3'- aGCAu--CGAUGGCAc------ACGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 28795 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 93670 0.67 0.823901
Target:  5'- uUCGUGcGCaUGCCGcgcGUGCAGCUCucguUCCg -3'
miRNA:   3'- -AGCAU-CG-AUGGCa--CACGUCGAGc---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.