miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 130893 0.69 0.750406
Target:  5'- cCGacUGGCUGCUG-GcGCAGCUCGUgCCg -3'
miRNA:   3'- aGC--AUCGAUGGCaCaCGUCGAGCG-GG- -5'
6381 5' -56 NC_001847.1 + 24403 0.69 0.750406
Target:  5'- --aUGGCgGCCGUG-GCGGC-CGCCg -3'
miRNA:   3'- agcAUCGaUGGCACaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 29190 0.69 0.750406
Target:  5'- aCGU-GCUGCCGuUGcUGgGGCU-GCCCg -3'
miRNA:   3'- aGCAuCGAUGGC-AC-ACgUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 128779 0.69 0.740647
Target:  5'- ----uGCUGCCGca-GCGGCUaCGCCCg -3'
miRNA:   3'- agcauCGAUGGCacaCGUCGA-GCGGG- -5'
6381 5' -56 NC_001847.1 + 115707 0.69 0.740647
Target:  5'- ---cGGCUGcggcCCGUGUGC-GCUUGCCg -3'
miRNA:   3'- agcaUCGAU----GGCACACGuCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 88455 0.69 0.740647
Target:  5'- cCGcgGGCcccgACCGcgcgcgcGUGCuGCUCGCCCu -3'
miRNA:   3'- aGCa-UCGa---UGGCa------CACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 86494 0.69 0.740647
Target:  5'- aCGaGGCUGCgGgg-GCGGCggCGCCCc -3'
miRNA:   3'- aGCaUCGAUGgCacaCGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 118430 0.69 0.730792
Target:  5'- uUCGcUGGUgAUCGUGcucgucugcgccUGcCGGCUCGCCCg -3'
miRNA:   3'- -AGC-AUCGaUGGCAC------------AC-GUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 96567 0.69 0.720851
Target:  5'- gCGgucuGCUgGCCGUGUGCcuGggCGCCCg -3'
miRNA:   3'- aGCau--CGA-UGGCACACGu-CgaGCGGG- -5'
6381 5' -56 NC_001847.1 + 110228 0.69 0.719852
Target:  5'- aCGU-GCggGCCGUGcuaaacaUGCGcggccuGCUCGCCCg -3'
miRNA:   3'- aGCAuCGa-UGGCAC-------ACGU------CGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 65680 0.7 0.710832
Target:  5'- gCGcAGCUGgCCGUGccccGCgAGCUaCGCCCg -3'
miRNA:   3'- aGCaUCGAU-GGCACa---CG-UCGA-GCGGG- -5'
6381 5' -56 NC_001847.1 + 60075 0.7 0.700745
Target:  5'- -gGUGGCgcuagugaugGCCGUGUucguggGCAGCcuccCGCCCa -3'
miRNA:   3'- agCAUCGa---------UGGCACA------CGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 46313 0.7 0.700745
Target:  5'- cCGUAGC-GCCGaGcGCAGCacggcCGCCCg -3'
miRNA:   3'- aGCAUCGaUGGCaCaCGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 62246 0.7 0.680405
Target:  5'- cUCGUGGCgcGCCaccUGCAGCU-GCCCg -3'
miRNA:   3'- -AGCAUCGa-UGGcacACGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 49224 0.7 0.67017
Target:  5'- cCGcgGGCU-UCGUGUacgucugcgacGCGGCUCGCCUg -3'
miRNA:   3'- aGCa-UCGAuGGCACA-----------CGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 11526 0.7 0.664014
Target:  5'- aCGUAGCcGCCGgGUGCugcguucgcgucuggAGUgCGCCCa -3'
miRNA:   3'- aGCAUCGaUGGCaCACG---------------UCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 34088 0.71 0.649615
Target:  5'- gCGUGGCggccGCCGUGgcucgcgcgGCGGCggaGCCUg -3'
miRNA:   3'- aGCAUCGa---UGGCACa--------CGUCGag-CGGG- -5'
6381 5' -56 NC_001847.1 + 43942 0.71 0.649615
Target:  5'- cCGUGcccGCUGCCGUGcUGCcguaccGGCUgGCCUu -3'
miRNA:   3'- aGCAU---CGAUGGCAC-ACG------UCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 131349 0.71 0.649615
Target:  5'- cCGUgccGGCacGCCGUcGUGCAGCacauccCGCCCg -3'
miRNA:   3'- aGCA---UCGa-UGGCA-CACGUCGa-----GCGGG- -5'
6381 5' -56 NC_001847.1 + 86998 0.71 0.639312
Target:  5'- aCGUGGUgGCUGaGgacgGCGGCUgGCCCg -3'
miRNA:   3'- aGCAUCGaUGGCaCa---CGUCGAgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.