miRNA display CGI


Results 41 - 60 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 49224 0.7 0.67017
Target:  5'- cCGcgGGCU-UCGUGUacgucugcgacGCGGCUCGCCUg -3'
miRNA:   3'- aGCa-UCGAuGGCACA-----------CGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 49419 0.67 0.856686
Target:  5'- gCGcAGcCUGCCGccGUGCacuggcgcuuguGGCUCGCUCa -3'
miRNA:   3'- aGCaUC-GAUGGCa-CACG------------UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 49752 0.67 0.840678
Target:  5'- gCGUGccGCUguACCccGUGCAGCUguacaUGCCCg -3'
miRNA:   3'- aGCAU--CGA--UGGcaCACGUCGA-----GCGGG- -5'
6381 5' -56 NC_001847.1 + 50391 0.66 0.864384
Target:  5'- cCGUGGCcaUGCuCGUGcUGCGGUuggugcgCGCCUg -3'
miRNA:   3'- aGCAUCG--AUG-GCAC-ACGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 50552 0.69 0.76006
Target:  5'- gCGgcGCUGCUGgaccGCGGCgUCGCCUc -3'
miRNA:   3'- aGCauCGAUGGCaca-CGUCG-AGCGGG- -5'
6381 5' -56 NC_001847.1 + 52069 0.8 0.22431
Target:  5'- cCGUGGCUGCCGUGuUGC-GCUCuucggccgcgccgcgGCCCa -3'
miRNA:   3'- aGCAUCGAUGGCAC-ACGuCGAG---------------CGGG- -5'
6381 5' -56 NC_001847.1 + 54229 0.68 0.788293
Target:  5'- gCGUGGacuguCUGCuCGUGgGCAGCgcugcgguggCGCCCg -3'
miRNA:   3'- aGCAUC-----GAUG-GCACaCGUCGa---------GCGGG- -5'
6381 5' -56 NC_001847.1 + 54596 0.67 0.856686
Target:  5'- uUCGggGGC-GCCGUGgGCgAGCaaucCGCCCg -3'
miRNA:   3'- -AGCa-UCGaUGGCACaCG-UCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 55153 0.66 0.886182
Target:  5'- gCGgGGCgucaccGCCGcgcaGCGGCUCGCCUg -3'
miRNA:   3'- aGCaUCGa-----UGGCaca-CGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 57558 0.67 0.832382
Target:  5'- ---cGGgUGCCGccGUGCgAGCUCgGCCCg -3'
miRNA:   3'- agcaUCgAUGGCa-CACG-UCGAG-CGGG- -5'
6381 5' -56 NC_001847.1 + 58382 0.67 0.848782
Target:  5'- cUCGUAGCgggUGCCGgcggGCAGCa-GCUCu -3'
miRNA:   3'- -AGCAUCG---AUGGCaca-CGUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 60075 0.7 0.700745
Target:  5'- -gGUGGCgcuagugaugGCCGUGUucguggGCAGCcuccCGCCCa -3'
miRNA:   3'- agCAUCGa---------UGGCACA------CGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 62246 0.7 0.680405
Target:  5'- cUCGUGGCgcGCCaccUGCAGCU-GCCCg -3'
miRNA:   3'- -AGCAUCGa-UGGcacACGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 62684 0.68 0.779012
Target:  5'- ---cAGCacGCCGUgGUGCAGCgccgCGUCCa -3'
miRNA:   3'- agcaUCGa-UGGCA-CACGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 63320 0.66 0.87187
Target:  5'- gCGUGGUUcagcGCgGcGUGCuccuGCUCGCCg -3'
miRNA:   3'- aGCAUCGA----UGgCaCACGu---CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 63424 0.74 0.478619
Target:  5'- cUUGUAGaCcGCCGUGcaguccucggGCAGCUCGCCg -3'
miRNA:   3'- -AGCAUC-GaUGGCACa---------CGUCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 65680 0.7 0.710832
Target:  5'- gCGcAGCUGgCCGUGccccGCgAGCUaCGCCCg -3'
miRNA:   3'- aGCaUCGAU-GGCACa---CG-UCGA-GCGGG- -5'
6381 5' -56 NC_001847.1 + 67837 0.68 0.769598
Target:  5'- cCGgcggGGCUGCCGgcgcUGgcgcGCGGCUCGCg- -3'
miRNA:   3'- aGCa---UCGAUGGC----ACa---CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 70125 0.66 0.892999
Target:  5'- aCGUGGCgcucgcGCCGcuUGCGGUcCGCUCg -3'
miRNA:   3'- aGCAUCGa-----UGGCacACGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 73813 0.68 0.806418
Target:  5'- cCGUGGUcGCCGcGcUGCAGCggcugcgCGUCCu -3'
miRNA:   3'- aGCAUCGaUGGCaC-ACGUCGa------GCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.