miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 74606 0.66 0.899584
Target:  5'- gCGUGGCcaacGCCaucGUGCAGCUgggcagCGCCUc -3'
miRNA:   3'- aGCAUCGa---UGGca-CACGUCGA------GCGGG- -5'
6381 5' -56 NC_001847.1 + 74842 0.71 0.622819
Target:  5'- aUCGUGGUgcgcuuuaggggcgGCUGUGgugGCGGCUC-CCCu -3'
miRNA:   3'- -AGCAUCGa-------------UGGCACa--CGUCGAGcGGG- -5'
6381 5' -56 NC_001847.1 + 76373 0.66 0.864384
Target:  5'- cCGUAGCUgcagcaccagcgACCGUc-GCGGC-CGCCg -3'
miRNA:   3'- aGCAUCGA------------UGGCAcaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 77970 0.67 0.856686
Target:  5'- gCGUGcuuuucGCUGCUGgcggGCGGCgagcgCGCCCu -3'
miRNA:   3'- aGCAU------CGAUGGCaca-CGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 78854 0.71 0.629003
Target:  5'- -aGUAGCUGgUGUGcucGCGGUgcgCGCCCu -3'
miRNA:   3'- agCAUCGAUgGCACa--CGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 79349 0.68 0.796524
Target:  5'- cUCGcgagcAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3'
miRNA:   3'- -AGCa----UCGAUGGC-------------ACACG----------UCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 79357 0.68 0.796524
Target:  5'- ---cAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3'
miRNA:   3'- agcaUCGAUGGC-------------ACACG----------UCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 80859 0.68 0.788293
Target:  5'- gCGgcGCgcgucgagGCCGUccgGCAGCaCGCCCg -3'
miRNA:   3'- aGCauCGa-------UGGCAca-CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 80926 0.67 0.856686
Target:  5'- cCGUGGCcGCCGUGcugGCcGaaaaUCGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACa--CGuCg---AGCGGg -5'
6381 5' -56 NC_001847.1 + 81362 0.68 0.815244
Target:  5'- cUCGcGGCgGCUGcgGUGCuGC-CGCCCu -3'
miRNA:   3'- -AGCaUCGaUGGCa-CACGuCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 85263 0.67 0.856686
Target:  5'- aCGUA---GCCGUGcaGCAGCUCGCa- -3'
miRNA:   3'- aGCAUcgaUGGCACa-CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 85662 0.66 0.898936
Target:  5'- uUUGgcGCgGCCGUGcugGCGcgcaggcGCUCGCCg -3'
miRNA:   3'- -AGCauCGaUGGCACa--CGU-------CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 85949 0.67 0.823901
Target:  5'- cCGUcgcGUUGCCGUccccgcuUGCAGCggaCGCCCg -3'
miRNA:   3'- aGCAu--CGAUGGCAc------ACGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 86494 0.69 0.740647
Target:  5'- aCGaGGCUGCgGgg-GCGGCggCGCCCc -3'
miRNA:   3'- aGCaUCGAUGgCacaCGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 86502 0.68 0.779012
Target:  5'- gCGgcGCUgcACCGUcGcGCGGCggcugggCGCCCg -3'
miRNA:   3'- aGCauCGA--UGGCA-CaCGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 86998 0.71 0.639312
Target:  5'- aCGUGGUgGCUGaGgacgGCGGCUgGCCCg -3'
miRNA:   3'- aGCAUCGaUGGCaCa---CGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 88455 0.69 0.740647
Target:  5'- cCGcgGGCcccgACCGcgcgcgcGUGCuGCUCGCCCu -3'
miRNA:   3'- aGCa-UCGa---UGGCa------CACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 91332 0.67 0.848782
Target:  5'- uUCGgcGCgGCCGUcgagcgucaGUaGUAGCgCGCCCg -3'
miRNA:   3'- -AGCauCGaUGGCA---------CA-CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 92519 0.66 0.864384
Target:  5'- gUCGgcGCUGCCGccccccuccGCGGCggCGCCg -3'
miRNA:   3'- -AGCauCGAUGGCaca------CGUCGa-GCGGg -5'
6381 5' -56 NC_001847.1 + 92871 0.66 0.877702
Target:  5'- aCGUGGC-GCCGcgcgagcucgagGUGCuGCU-GCCCa -3'
miRNA:   3'- aGCAUCGaUGGCa-----------CACGuCGAgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.