miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 108443 0.66 0.87187
Target:  5'- aCGUGGacGCCGaGcUGCGGCUggaGCCCg -3'
miRNA:   3'- aGCAUCgaUGGCaC-ACGUCGAg--CGGG- -5'
6381 5' -56 NC_001847.1 + 106225 0.68 0.787371
Target:  5'- gUCGUagcggcGGCUcauggccacgcagGCCGccacGUGCGGCagCGCCCa -3'
miRNA:   3'- -AGCA------UCGA-------------UGGCa---CACGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 105282 1.13 0.001368
Target:  5'- gUCGUAGCUACCGUGUGCAGCUCGCCCa -3'
miRNA:   3'- -AGCAUCGAUGGCACACGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 104261 0.68 0.815244
Target:  5'- gCGUGGCcACCGUGUaGCGcacguuGC-CGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACA-CGU------CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 102689 0.66 0.864384
Target:  5'- gCGcUGGCgGgCGUGUGCuGCggcagCGCCUg -3'
miRNA:   3'- aGC-AUCGaUgGCACACGuCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 100581 0.66 0.886182
Target:  5'- -aGgcGCUGCCGccgcUGCAGCggccgagcaGCCCg -3'
miRNA:   3'- agCauCGAUGGCac--ACGUCGag-------CGGG- -5'
6381 5' -56 NC_001847.1 + 100290 0.75 0.414488
Target:  5'- cUCGaUGGCUGCCGUcgcccgcUGCGcGCUCGCCUc -3'
miRNA:   3'- -AGC-AUCGAUGGCAc------ACGU-CGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 97196 0.76 0.372044
Target:  5'- --aUGGCUACCG-GUGCGguuGCUCGCCg -3'
miRNA:   3'- agcAUCGAUGGCaCACGU---CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 97012 0.66 0.899584
Target:  5'- gCGgcGCUgGCCGcgGgggGCAGCgCGUCCu -3'
miRNA:   3'- aGCauCGA-UGGCa-Ca--CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 96567 0.69 0.720851
Target:  5'- gCGgucuGCUgGCCGUGUGCcuGggCGCCCg -3'
miRNA:   3'- aGCau--CGA-UGGCACACGu-CgaGCGGG- -5'
6381 5' -56 NC_001847.1 + 94243 0.72 0.547253
Target:  5'- gCGcGGC-GCCGUGgaGCGGCUCGCgCCc -3'
miRNA:   3'- aGCaUCGaUGGCACa-CGUCGAGCG-GG- -5'
6381 5' -56 NC_001847.1 + 93759 0.68 0.769598
Target:  5'- gCGcGGCUGCCGgcgGCGGCcCGgCCg -3'
miRNA:   3'- aGCaUCGAUGGCacaCGUCGaGCgGG- -5'
6381 5' -56 NC_001847.1 + 93670 0.67 0.823901
Target:  5'- uUCGUGcGCaUGCCGcgcGUGCAGCUCucguUCCg -3'
miRNA:   3'- -AGCAU-CG-AUGGCa--CACGUCGAGc---GGG- -5'
6381 5' -56 NC_001847.1 + 92871 0.66 0.877702
Target:  5'- aCGUGGC-GCCGcgcgagcucgagGUGCuGCU-GCCCa -3'
miRNA:   3'- aGCAUCGaUGGCa-----------CACGuCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 92519 0.66 0.864384
Target:  5'- gUCGgcGCUGCCGccccccuccGCGGCggCGCCg -3'
miRNA:   3'- -AGCauCGAUGGCaca------CGUCGa-GCGGg -5'
6381 5' -56 NC_001847.1 + 91332 0.67 0.848782
Target:  5'- uUCGgcGCgGCCGUcgagcgucaGUaGUAGCgCGCCCg -3'
miRNA:   3'- -AGCauCGaUGGCA---------CA-CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 88455 0.69 0.740647
Target:  5'- cCGcgGGCcccgACCGcgcgcgcGUGCuGCUCGCCCu -3'
miRNA:   3'- aGCa-UCGa---UGGCa------CACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 86998 0.71 0.639312
Target:  5'- aCGUGGUgGCUGaGgacgGCGGCUgGCCCg -3'
miRNA:   3'- aGCAUCGaUGGCaCa---CGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 86502 0.68 0.779012
Target:  5'- gCGgcGCUgcACCGUcGcGCGGCggcugggCGCCCg -3'
miRNA:   3'- aGCauCGA--UGGCA-CaCGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 86494 0.69 0.740647
Target:  5'- aCGaGGCUGCgGgg-GCGGCggCGCCCc -3'
miRNA:   3'- aGCaUCGAUGgCacaCGUCGa-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.