miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 42331 0.66 0.888937
Target:  5'- uUCGUgcugugGGCgcCCGUGUggcgcgGCGGCgacguacucuucgagUCGCCCa -3'
miRNA:   3'- -AGCA------UCGauGGCACA------CGUCG---------------AGCGGG- -5'
6381 5' -56 NC_001847.1 + 39224 0.66 0.899584
Target:  5'- cCGggcucagAGCUcguuccaccACCGUcaggcgGUGCgcuuGGCUCGCCCc -3'
miRNA:   3'- aGCa------UCGA---------UGGCA------CACG----UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 37310 0.77 0.317783
Target:  5'- aCGU-GCUaGCCGUGUgGCGGCacgCGCCCg -3'
miRNA:   3'- aGCAuCGA-UGGCACA-CGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 35966 0.66 0.899584
Target:  5'- gCGgcGCUGCUGUGgcucccGcCGGCUgGCgCCa -3'
miRNA:   3'- aGCauCGAUGGCACa-----C-GUCGAgCG-GG- -5'
6381 5' -56 NC_001847.1 + 35919 0.66 0.886182
Target:  5'- gCGUGGgaGCCuuuGUG-GCGGCgCGCCg -3'
miRNA:   3'- aGCAUCgaUGG---CACaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 35731 0.66 0.892328
Target:  5'- aCGUGGCcGCgGUGgaguggcUGCAGCaagcgCGCUCu -3'
miRNA:   3'- aGCAUCGaUGgCAC-------ACGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 35544 0.74 0.44134
Target:  5'- gUCGUGGCUGCCGag-GCGGCgCGCgaCCg -3'
miRNA:   3'- -AGCAUCGAUGGCacaCGUCGaGCG--GG- -5'
6381 5' -56 NC_001847.1 + 35133 0.68 0.769598
Target:  5'- --cUGGCgGCCGUGccuCGGCUCGCCa -3'
miRNA:   3'- agcAUCGaUGGCACac-GUCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 34088 0.71 0.649615
Target:  5'- gCGUGGCggccGCCGUGgcucgcgcgGCGGCggaGCCUg -3'
miRNA:   3'- aGCAUCGa---UGGCACa--------CGUCGag-CGGG- -5'
6381 5' -56 NC_001847.1 + 33919 0.69 0.76006
Target:  5'- cUCGgggaGGCUGgccuccCCGUGUGCAgGCcCGCCg -3'
miRNA:   3'- -AGCa---UCGAU------GGCACACGU-CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 33328 0.66 0.892999
Target:  5'- uUCGUGGCggcgcGCUGcGUGaCGGUggGCCCc -3'
miRNA:   3'- -AGCAUCGa----UGGCaCAC-GUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 29417 0.66 0.892999
Target:  5'- gCGgcGCggACCGUG-GCcccGCUCGCgCg -3'
miRNA:   3'- aGCauCGa-UGGCACaCGu--CGAGCGgG- -5'
6381 5' -56 NC_001847.1 + 29190 0.69 0.750406
Target:  5'- aCGU-GCUGCCGuUGcUGgGGCU-GCCCg -3'
miRNA:   3'- aGCAuCGAUGGC-AC-ACgUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 29011 0.66 0.886182
Target:  5'- ---cGGC-GCCGgcgGCAGCggCGCCCg -3'
miRNA:   3'- agcaUCGaUGGCacaCGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 28988 0.66 0.892999
Target:  5'- aCGUgcgccaugcuagAGCgcGCCGUGcuggcGCAGCUaucgCGCCCa -3'
miRNA:   3'- aGCA------------UCGa-UGGCACa----CGUCGA----GCGGG- -5'
6381 5' -56 NC_001847.1 + 28795 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 28726 0.66 0.864384
Target:  5'- gCGgcGCgGCCGcGgGCAGCgUCGCCg -3'
miRNA:   3'- aGCauCGaUGGCaCaCGUCG-AGCGGg -5'
6381 5' -56 NC_001847.1 + 24938 0.68 0.806418
Target:  5'- -gGUacAGCaGCUGg--GCGGCUUGCCCg -3'
miRNA:   3'- agCA--UCGaUGGCacaCGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 24403 0.69 0.750406
Target:  5'- --aUGGCgGCCGUG-GCGGC-CGCCg -3'
miRNA:   3'- agcAUCGaUGGCACaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 20582 0.68 0.779012
Target:  5'- gUCGUAGagGCCGcUGUGUaccAGCaUGCCCu -3'
miRNA:   3'- -AGCAUCgaUGGC-ACACG---UCGaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.