miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 79349 0.68 0.796524
Target:  5'- cUCGcgagcAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3'
miRNA:   3'- -AGCa----UCGAUGGC-------------ACACG----------UCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 28726 0.66 0.864384
Target:  5'- gCGgcGCgGCCGcGgGCAGCgUCGCCg -3'
miRNA:   3'- aGCauCGaUGGCaCaCGUCG-AGCGGg -5'
6381 5' -56 NC_001847.1 + 85949 0.67 0.823901
Target:  5'- cCGUcgcGUUGCCGUccccgcuUGCAGCggaCGCCCg -3'
miRNA:   3'- aGCAu--CGAUGGCAc------ACGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 81362 0.68 0.815244
Target:  5'- cUCGcGGCgGCUGcgGUGCuGC-CGCCCu -3'
miRNA:   3'- -AGCaUCGaUGGCa-CACGuCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 80859 0.68 0.788293
Target:  5'- gCGgcGCgcgucgagGCCGUccgGCAGCaCGCCCg -3'
miRNA:   3'- aGCauCGa-------UGGCAca-CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 86502 0.68 0.779012
Target:  5'- gCGgcGCUgcACCGUcGcGCGGCggcugggCGCCCg -3'
miRNA:   3'- aGCauCGA--UGGCA-CaCGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 93759 0.68 0.769598
Target:  5'- gCGcGGCUGCCGgcgGCGGCcCGgCCg -3'
miRNA:   3'- aGCaUCGAUGGCacaCGUCGaGCgGG- -5'
6381 5' -56 NC_001847.1 + 88455 0.69 0.740647
Target:  5'- cCGcgGGCcccgACCGcgcgcgcGUGCuGCUCGCCCu -3'
miRNA:   3'- aGCa-UCGa---UGGCa------CACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 49224 0.7 0.67017
Target:  5'- cCGcgGGCU-UCGUGUacgucugcgacGCGGCUCGCCUg -3'
miRNA:   3'- aGCa-UCGAuGGCACA-----------CGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 74842 0.71 0.622819
Target:  5'- aUCGUGGUgcgcuuuaggggcgGCUGUGgugGCGGCUC-CCCu -3'
miRNA:   3'- -AGCAUCGa-------------UGGCACa--CGUCGAGcGGG- -5'
6381 5' -56 NC_001847.1 + 63424 0.74 0.478619
Target:  5'- cUUGUAGaCcGCCGUGcaguccucggGCAGCUCGCCg -3'
miRNA:   3'- -AGCAUC-GaUGGCACa---------CGUCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 44070 0.73 0.48818
Target:  5'- uUCGUgcAGCUGUCGUGccugcUGCGGCgucugCGCCCg -3'
miRNA:   3'- -AGCA--UCGAUGGCAC-----ACGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 15396 0.71 0.598123
Target:  5'- gUCGgGGCUgggGCCGgGUuuCGGCUCGCCCu -3'
miRNA:   3'- -AGCaUCGA---UGGCaCAc-GUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 18331 0.71 0.629003
Target:  5'- gCGgagcAGCUGCCGgGcGCAGUcgcggUCGCCCa -3'
miRNA:   3'- aGCa---UCGAUGGCaCaCGUCG-----AGCGGG- -5'
6381 5' -56 NC_001847.1 + 78854 0.71 0.629003
Target:  5'- -aGUAGCUGgUGUGcucGCGGUgcgCGCCCu -3'
miRNA:   3'- agCAUCGAUgGCACa--CGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 58382 0.67 0.848782
Target:  5'- cUCGUAGCgggUGCCGgcggGCAGCa-GCUCu -3'
miRNA:   3'- -AGCAUCG---AUGGCaca-CGUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 46927 0.67 0.848782
Target:  5'- gUCGggcccgGGCUccggGCCGcGUGCGGCgaaGCCa -3'
miRNA:   3'- -AGCa-----UCGA----UGGCaCACGUCGag-CGGg -5'
6381 5' -56 NC_001847.1 + 120979 0.67 0.840678
Target:  5'- gCGUAaGCgcgGCCGUcgcccuaGCGGC-CGCCCa -3'
miRNA:   3'- aGCAU-CGa--UGGCAca-----CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 108443 0.66 0.87187
Target:  5'- aCGUGGacGCCGaGcUGCGGCUggaGCCCg -3'
miRNA:   3'- aGCAUCgaUGGCaC-ACGUCGAg--CGGG- -5'
6381 5' -56 NC_001847.1 + 125445 0.67 0.83322
Target:  5'- gCGUGGCUgGCCGgagGacgggcgggucggcgGCAGCUCGCg- -3'
miRNA:   3'- aGCAUCGA-UGGCa--Ca--------------CGUCGAGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.