miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 29417 0.66 0.892999
Target:  5'- gCGgcGCggACCGUG-GCcccGCUCGCgCg -3'
miRNA:   3'- aGCauCGa-UGGCACaCGu--CGAGCGgG- -5'
6381 5' -56 NC_001847.1 + 63424 0.74 0.478619
Target:  5'- cUUGUAGaCcGCCGUGcaguccucggGCAGCUCGCCg -3'
miRNA:   3'- -AGCAUC-GaUGGCACa---------CGUCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 110228 0.69 0.719852
Target:  5'- aCGU-GCggGCCGUGcuaaacaUGCGcggccuGCUCGCCCg -3'
miRNA:   3'- aGCAuCGa-UGGCAC-------ACGU------CGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 86494 0.69 0.740647
Target:  5'- aCGaGGCUGCgGgg-GCGGCggCGCCCc -3'
miRNA:   3'- aGCaUCGAUGgCacaCGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 18555 0.67 0.856686
Target:  5'- -aGUAGCggggcucggugaccgGCCcGUGUGCcGCgccaaagUCGCCCa -3'
miRNA:   3'- agCAUCGa--------------UGG-CACACGuCG-------AGCGGG- -5'
6381 5' -56 NC_001847.1 + 49419 0.67 0.856686
Target:  5'- gCGcAGcCUGCCGccGUGCacuggcgcuuguGGCUCGCUCa -3'
miRNA:   3'- aGCaUC-GAUGGCa-CACG------------UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 9874 0.67 0.856686
Target:  5'- aCGgcucCUGCCGccucUGCcGCUCGCCCg -3'
miRNA:   3'- aGCauc-GAUGGCac--ACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 127341 0.67 0.848782
Target:  5'- gCGgccGGCUGCCGcGgcagggGCGGCgggGCCCg -3'
miRNA:   3'- aGCa--UCGAUGGCaCa-----CGUCGag-CGGG- -5'
6381 5' -56 NC_001847.1 + 58382 0.67 0.848782
Target:  5'- cUCGUAGCgggUGCCGgcggGCAGCa-GCUCu -3'
miRNA:   3'- -AGCAUCG---AUGGCaca-CGUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 46927 0.67 0.848782
Target:  5'- gUCGggcccgGGCUccggGCCGcGUGCGGCgaaGCCa -3'
miRNA:   3'- -AGCa-----UCGA----UGGCaCACGUCGag-CGGg -5'
6381 5' -56 NC_001847.1 + 46313 0.7 0.700745
Target:  5'- cCGUAGC-GCCGaGcGCAGCacggcCGCCCg -3'
miRNA:   3'- aGCAUCGaUGGCaCaCGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 60075 0.7 0.700745
Target:  5'- -gGUGGCgcuagugaugGCCGUGUucguggGCAGCcuccCGCCCa -3'
miRNA:   3'- agCAUCGa---------UGGCACA------CGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 44070 0.73 0.48818
Target:  5'- uUCGUgcAGCUGUCGUGccugcUGCGGCgucugCGCCCg -3'
miRNA:   3'- -AGCA--UCGAUGGCAC-----ACGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 15396 0.71 0.598123
Target:  5'- gUCGgGGCUgggGCCGgGUuuCGGCUCGCCCu -3'
miRNA:   3'- -AGCaUCGA---UGGCaCAc-GUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 18331 0.71 0.629003
Target:  5'- gCGgagcAGCUGCCGgGcGCAGUcgcggUCGCCCa -3'
miRNA:   3'- aGCa---UCGAUGGCaCaCGUCG-----AGCGGG- -5'
6381 5' -56 NC_001847.1 + 78854 0.71 0.629003
Target:  5'- -aGUAGCUGgUGUGcucGCGGUgcgCGCCCu -3'
miRNA:   3'- agCAUCGAUgGCACa--CGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 131349 0.71 0.649615
Target:  5'- cCGUgccGGCacGCCGUcGUGCAGCacauccCGCCCg -3'
miRNA:   3'- aGCA---UCGa-UGGCA-CACGUCGa-----GCGGG- -5'
6381 5' -56 NC_001847.1 + 43942 0.71 0.649615
Target:  5'- cCGUGcccGCUGCCGUGcUGCcguaccGGCUgGCCUu -3'
miRNA:   3'- aGCAU---CGAUGGCAC-ACG------UCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 11526 0.7 0.664014
Target:  5'- aCGUAGCcGCCGgGUGCugcguucgcgucuggAGUgCGCCCa -3'
miRNA:   3'- aGCAUCGaUGGCaCACG---------------UCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 62246 0.7 0.680405
Target:  5'- cUCGUGGCgcGCCaccUGCAGCU-GCCCg -3'
miRNA:   3'- -AGCAUCGa-UGGcacACGUCGAgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.