miRNA display CGI


Results 101 - 113 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 67837 0.68 0.769598
Target:  5'- cCGgcggGGCUGCCGgcgcUGgcgcGCGGCUCGCg- -3'
miRNA:   3'- aGCa---UCGAUGGC----ACa---CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 125445 0.67 0.83322
Target:  5'- gCGUGGCUgGCCGgagGacgggcgggucggcgGCAGCUCGCg- -3'
miRNA:   3'- aGCAUCGA-UGGCa--Ca--------------CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 57558 0.67 0.832382
Target:  5'- ---cGGgUGCCGccGUGCgAGCUCgGCCCg -3'
miRNA:   3'- agcaUCgAUGGCa-CACG-UCGAG-CGGG- -5'
6381 5' -56 NC_001847.1 + 121828 0.67 0.832382
Target:  5'- -gGUacAGCUcgGCCGacUGCAGCccggCGCCCg -3'
miRNA:   3'- agCA--UCGA--UGGCacACGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 93670 0.67 0.823901
Target:  5'- uUCGUGcGCaUGCCGcgcGUGCAGCUCucguUCCg -3'
miRNA:   3'- -AGCAU-CG-AUGGCa--CACGUCGAGc---GGG- -5'
6381 5' -56 NC_001847.1 + 28795 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 1448 0.68 0.815244
Target:  5'- gCGUGGCcACCGUGUaGCGcacguuGC-CGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACA-CGU------CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 73813 0.68 0.806418
Target:  5'- cCGUGGUcGCCGcGcUGCAGCggcugcgCGUCCu -3'
miRNA:   3'- aGCAUCGaUGGCaC-ACGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 24938 0.68 0.806418
Target:  5'- -gGUacAGCaGCUGg--GCGGCUUGCCCg -3'
miRNA:   3'- agCA--UCGaUGGCacaCGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 129143 0.68 0.797431
Target:  5'- aCGUGGCggucGCCGuUGUuCGGCU-GCCCc -3'
miRNA:   3'- aGCAUCGa---UGGC-ACAcGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 3412 0.68 0.787371
Target:  5'- gUCGUagcggcGGCUcauggccacgcagGCCGccacGUGCGGCagCGCCCa -3'
miRNA:   3'- -AGCA------UCGA-------------UGGCa---CACGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 62684 0.68 0.779012
Target:  5'- ---cAGCacGCCGUgGUGCAGCgccgCGUCCa -3'
miRNA:   3'- agcaUCGa-UGGCA-CACGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 18331 0.71 0.629003
Target:  5'- gCGgagcAGCUGCCGgGcGCAGUcgcggUCGCCCa -3'
miRNA:   3'- aGCa---UCGAUGGCaCaCGUCG-----AGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.