miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 33328 0.66 0.892999
Target:  5'- uUCGUGGCggcgcGCUGcGUGaCGGUggGCCCc -3'
miRNA:   3'- -AGCAUCGa----UGGCaCAC-GUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 70125 0.66 0.892999
Target:  5'- aCGUGGCgcucgcGCCGcuUGCGGUcCGCUCg -3'
miRNA:   3'- aGCAUCGa-----UGGCacACGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 117822 0.66 0.892999
Target:  5'- gCGccGGCUacgcgGCCGUGUGCcGCgcCGCCg -3'
miRNA:   3'- aGCa-UCGA-----UGGCACACGuCGa-GCGGg -5'
6381 5' -56 NC_001847.1 + 85662 0.66 0.898936
Target:  5'- uUUGgcGCgGCCGUGcugGCGcgcaggcGCUCGCCg -3'
miRNA:   3'- -AGCauCGaUGGCACa--CGU-------CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 35966 0.66 0.899584
Target:  5'- gCGgcGCUGCUGUGgcucccGcCGGCUgGCgCCa -3'
miRNA:   3'- aGCauCGAUGGCACa-----C-GUCGAgCG-GG- -5'
6381 5' -56 NC_001847.1 + 108443 0.66 0.87187
Target:  5'- aCGUGGacGCCGaGcUGCGGCUggaGCCCg -3'
miRNA:   3'- aGCAUCgaUGGCaC-ACGUCGAg--CGGG- -5'
6381 5' -56 NC_001847.1 + 63320 0.66 0.87187
Target:  5'- gCGUGGUUcagcGCgGcGUGCuccuGCUCGCCg -3'
miRNA:   3'- aGCAUCGA----UGgCaCACGu---CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 46927 0.67 0.848782
Target:  5'- gUCGggcccgGGCUccggGCCGcGUGCGGCgaaGCCa -3'
miRNA:   3'- -AGCa-----UCGA----UGGCaCACGUCGag-CGGg -5'
6381 5' -56 NC_001847.1 + 58382 0.67 0.848782
Target:  5'- cUCGUAGCgggUGCCGgcggGCAGCa-GCUCu -3'
miRNA:   3'- -AGCAUCG---AUGGCaca-CGUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 127341 0.67 0.848782
Target:  5'- gCGgccGGCUGCCGcGgcagggGCGGCgggGCCCg -3'
miRNA:   3'- aGCa--UCGAUGGCaCa-----CGUCGag-CGGG- -5'
6381 5' -56 NC_001847.1 + 18555 0.67 0.856686
Target:  5'- -aGUAGCggggcucggugaccgGCCcGUGUGCcGCgccaaagUCGCCCa -3'
miRNA:   3'- agCAUCGa--------------UGG-CACACGuCG-------AGCGGG- -5'
6381 5' -56 NC_001847.1 + 9874 0.67 0.856686
Target:  5'- aCGgcucCUGCCGccucUGCcGCUCGCCCg -3'
miRNA:   3'- aGCauc-GAUGGCac--ACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 49419 0.67 0.856686
Target:  5'- gCGcAGcCUGCCGccGUGCacuggcgcuuguGGCUCGCUCa -3'
miRNA:   3'- aGCaUC-GAUGGCa-CACG------------UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 85263 0.67 0.856686
Target:  5'- aCGUA---GCCGUGcaGCAGCUCGCa- -3'
miRNA:   3'- aGCAUcgaUGGCACa-CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 54596 0.67 0.856686
Target:  5'- uUCGggGGC-GCCGUGgGCgAGCaaucCGCCCg -3'
miRNA:   3'- -AGCa-UCGaUGGCACaCG-UCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 102689 0.66 0.864384
Target:  5'- gCGcUGGCgGgCGUGUGCuGCggcagCGCCUg -3'
miRNA:   3'- aGC-AUCGaUgGCACACGuCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 92519 0.66 0.864384
Target:  5'- gUCGgcGCUGCCGccccccuccGCGGCggCGCCg -3'
miRNA:   3'- -AGCauCGAUGGCaca------CGUCGa-GCGGg -5'
6381 5' -56 NC_001847.1 + 50391 0.66 0.864384
Target:  5'- cCGUGGCcaUGCuCGUGcUGCGGUuggugcgCGCCUg -3'
miRNA:   3'- aGCAUCG--AUG-GCAC-ACGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 76373 0.66 0.864384
Target:  5'- cCGUAGCUgcagcaccagcgACCGUc-GCGGC-CGCCg -3'
miRNA:   3'- aGCAUCGA------------UGGCAcaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 20224 0.66 0.87187
Target:  5'- aCGcgAGCccCCGUGccccaGgGGCUCGCCCc -3'
miRNA:   3'- aGCa-UCGauGGCACa----CgUCGAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.