Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6381 | 5' | -56 | NC_001847.1 | + | 102689 | 0.66 | 0.864384 |
Target: 5'- gCGcUGGCgGgCGUGUGCuGCggcagCGCCUg -3' miRNA: 3'- aGC-AUCGaUgGCACACGuCGa----GCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 54596 | 0.67 | 0.856686 |
Target: 5'- uUCGggGGC-GCCGUGgGCgAGCaaucCGCCCg -3' miRNA: 3'- -AGCa-UCGaUGGCACaCG-UCGa---GCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 85263 | 0.67 | 0.856686 |
Target: 5'- aCGUA---GCCGUGcaGCAGCUCGCa- -3' miRNA: 3'- aGCAUcgaUGGCACa-CGUCGAGCGgg -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 118430 | 0.69 | 0.730792 |
Target: 5'- uUCGcUGGUgAUCGUGcucgucugcgccUGcCGGCUCGCCCg -3' miRNA: 3'- -AGC-AUCGaUGGCAC------------AC-GUCGAGCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 88455 | 0.69 | 0.740647 |
Target: 5'- cCGcgGGCcccgACCGcgcgcgcGUGCuGCUCGCCCu -3' miRNA: 3'- aGCa-UCGa---UGGCa------CACGuCGAGCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 29190 | 0.69 | 0.750406 |
Target: 5'- aCGU-GCUGCCGuUGcUGgGGCU-GCCCg -3' miRNA: 3'- aGCAuCGAUGGC-AC-ACgUCGAgCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 24403 | 0.69 | 0.750406 |
Target: 5'- --aUGGCgGCCGUG-GCGGC-CGCCg -3' miRNA: 3'- agcAUCGaUGGCACaCGUCGaGCGGg -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 93759 | 0.68 | 0.769598 |
Target: 5'- gCGcGGCUGCCGgcgGCGGCcCGgCCg -3' miRNA: 3'- aGCaUCGAUGGCacaCGUCGaGCgGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 46196 | 0.68 | 0.769598 |
Target: 5'- -gGUAGCgGCCGgcgGCGGC-CGCCg -3' miRNA: 3'- agCAUCGaUGGCacaCGUCGaGCGGg -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 35133 | 0.68 | 0.769598 |
Target: 5'- --cUGGCgGCCGUGccuCGGCUCGCCa -3' miRNA: 3'- agcAUCGaUGGCACac-GUCGAGCGGg -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 96567 | 0.69 | 0.720851 |
Target: 5'- gCGgucuGCUgGCCGUGUGCcuGggCGCCCg -3' miRNA: 3'- aGCau--CGA-UGGCACACGu-CgaGCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 65680 | 0.7 | 0.710832 |
Target: 5'- gCGcAGCUGgCCGUGccccGCgAGCUaCGCCCg -3' miRNA: 3'- aGCaUCGAU-GGCACa---CG-UCGA-GCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 49224 | 0.7 | 0.67017 |
Target: 5'- cCGcgGGCU-UCGUGUacgucugcgacGCGGCUCGCCUg -3' miRNA: 3'- aGCa-UCGAuGGCACA-----------CGUCGAGCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 34088 | 0.71 | 0.649615 |
Target: 5'- gCGUGGCggccGCCGUGgcucgcgcgGCGGCggaGCCUg -3' miRNA: 3'- aGCAUCGa---UGGCACa--------CGUCGag-CGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 86998 | 0.71 | 0.639312 |
Target: 5'- aCGUGGUgGCUGaGgacgGCGGCUgGCCCg -3' miRNA: 3'- aGCAUCGaUGGCaCa---CGUCGAgCGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 74842 | 0.71 | 0.622819 |
Target: 5'- aUCGUGGUgcgcuuuaggggcgGCUGUGgugGCGGCUC-CCCu -3' miRNA: 3'- -AGCAUCGa-------------UGGCACa--CGUCGAGcGGG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 94243 | 0.72 | 0.547253 |
Target: 5'- gCGcGGC-GCCGUGgaGCGGCUCGCgCCc -3' miRNA: 3'- aGCaUCGaUGGCACa-CGUCGAGCG-GG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 35544 | 0.74 | 0.44134 |
Target: 5'- gUCGUGGCUGCCGag-GCGGCgCGCgaCCg -3' miRNA: 3'- -AGCAUCGAUGGCacaCGUCGaGCG--GG- -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 97196 | 0.76 | 0.372044 |
Target: 5'- --aUGGCUACCG-GUGCGguuGCUCGCCg -3' miRNA: 3'- agcAUCGAUGGCaCACGU---CGAGCGGg -5' |
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6381 | 5' | -56 | NC_001847.1 | + | 79349 | 0.68 | 0.796524 |
Target: 5'- cUCGcgagcAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3' miRNA: 3'- -AGCa----UCGAUGGC-------------ACACG----------UCGAGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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