miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 29011 0.66 0.886182
Target:  5'- ---cGGC-GCCGgcgGCAGCggCGCCCg -3'
miRNA:   3'- agcaUCGaUGGCacaCGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 121773 0.66 0.885488
Target:  5'- gCGUAGCgcucauuUGCCGUGUaGCcGggCGCCUc -3'
miRNA:   3'- aGCAUCG-------AUGGCACA-CGuCgaGCGGG- -5'
6381 5' -56 NC_001847.1 + 43598 0.66 0.879138
Target:  5'- gCGUGGCgcugggGCCG-GUGCuGGCcacgGCCCu -3'
miRNA:   3'- aGCAUCGa-----UGGCaCACG-UCGag--CGGG- -5'
6381 5' -56 NC_001847.1 + 19590 0.66 0.878421
Target:  5'- cCGUAcuuaagcGUUGCCGUG-GCGG-UCGCCa -3'
miRNA:   3'- aGCAU-------CGAUGGCACaCGUCgAGCGGg -5'
6381 5' -56 NC_001847.1 + 92871 0.66 0.877702
Target:  5'- aCGUGGC-GCCGcgcgagcucgagGUGCuGCU-GCCCa -3'
miRNA:   3'- aGCAUCGaUGGCa-----------CACGuCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 127750 0.66 0.87187
Target:  5'- -gGUacAGCaGCUGcG-GCGGCUUGCCCg -3'
miRNA:   3'- agCA--UCGaUGGCaCaCGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 108443 0.66 0.87187
Target:  5'- aCGUGGacGCCGaGcUGCGGCUggaGCCCg -3'
miRNA:   3'- aGCAUCgaUGGCaC-ACGUCGAg--CGGG- -5'
6381 5' -56 NC_001847.1 + 63320 0.66 0.87187
Target:  5'- gCGUGGUUcagcGCgGcGUGCuccuGCUCGCCg -3'
miRNA:   3'- aGCAUCGA----UGgCaCACGu---CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 20224 0.66 0.87187
Target:  5'- aCGcgAGCccCCGUGccccaGgGGCUCGCCCc -3'
miRNA:   3'- aGCa-UCGauGGCACa----CgUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 50391 0.66 0.864384
Target:  5'- cCGUGGCcaUGCuCGUGcUGCGGUuggugcgCGCCUg -3'
miRNA:   3'- aGCAUCG--AUG-GCAC-ACGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 28726 0.66 0.864384
Target:  5'- gCGgcGCgGCCGcGgGCAGCgUCGCCg -3'
miRNA:   3'- aGCauCGaUGGCaCaCGUCG-AGCGGg -5'
6381 5' -56 NC_001847.1 + 11462 0.66 0.864384
Target:  5'- ---cGGCUACCGUGcGCguGGCgaGCCCc -3'
miRNA:   3'- agcaUCGAUGGCACaCG--UCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 102689 0.66 0.864384
Target:  5'- gCGcUGGCgGgCGUGUGCuGCggcagCGCCUg -3'
miRNA:   3'- aGC-AUCGaUgGCACACGuCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 92519 0.66 0.864384
Target:  5'- gUCGgcGCUGCCGccccccuccGCGGCggCGCCg -3'
miRNA:   3'- -AGCauCGAUGGCaca------CGUCGa-GCGGg -5'
6381 5' -56 NC_001847.1 + 76373 0.66 0.864384
Target:  5'- cCGUAGCUgcagcaccagcgACCGUc-GCGGC-CGCCg -3'
miRNA:   3'- aGCAUCGA------------UGGCAcaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 49419 0.67 0.856686
Target:  5'- gCGcAGcCUGCCGccGUGCacuggcgcuuguGGCUCGCUCa -3'
miRNA:   3'- aGCaUC-GAUGGCa-CACG------------UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 9874 0.67 0.856686
Target:  5'- aCGgcucCUGCCGccucUGCcGCUCGCCCg -3'
miRNA:   3'- aGCauc-GAUGGCac--ACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 18555 0.67 0.856686
Target:  5'- -aGUAGCggggcucggugaccgGCCcGUGUGCcGCgccaaagUCGCCCa -3'
miRNA:   3'- agCAUCGa--------------UGG-CACACGuCG-------AGCGGG- -5'
6381 5' -56 NC_001847.1 + 77970 0.67 0.856686
Target:  5'- gCGUGcuuuucGCUGCUGgcggGCGGCgagcgCGCCCu -3'
miRNA:   3'- aGCAU------CGAUGGCaca-CGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 54596 0.67 0.856686
Target:  5'- uUCGggGGC-GCCGUGgGCgAGCaaucCGCCCg -3'
miRNA:   3'- -AGCa-UCGaUGGCACaCG-UCGa---GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.