miRNA display CGI


Results 21 - 40 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6382 3' -58.4 NC_001847.1 + 132976 0.66 0.797148
Target:  5'- ---aGGCGGCGcgGGCgcugcgagaCCUGguGCUGCg -3'
miRNA:   3'- agagCCGCUGUa-UCG---------GGACguCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 128448 0.66 0.797148
Target:  5'- gCUCGGCccugcGCGcgcGCCCgGcCGGCCGCc -3'
miRNA:   3'- aGAGCCGc----UGUau-CGGGaC-GUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 100352 0.66 0.797148
Target:  5'- --gCGGCcgcggguCGUAGCCgCgcgccGCGGCCGCg -3'
miRNA:   3'- agaGCCGcu-----GUAUCGG-Ga----CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 35933 0.66 0.797148
Target:  5'- --gUGGCGGCGcgccGCCgC-GCGGCCGCc -3'
miRNA:   3'- agaGCCGCUGUau--CGG-GaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 21676 0.66 0.795353
Target:  5'- --cCGGCGACGgguauggcgaggAGCCCgGCgaggAGCCGg -3'
miRNA:   3'- agaGCCGCUGUa-----------UCGGGaCG----UCGGCg -5'
6382 3' -58.4 NC_001847.1 + 124489 0.66 0.795353
Target:  5'- --cCGGCGACGgguauggcgaggAGCCCgGCgaggAGCCGg -3'
miRNA:   3'- agaGCCGCUGUa-----------UCGGGaCG----UCGGCg -5'
6382 3' -58.4 NC_001847.1 + 72598 0.66 0.795353
Target:  5'- --gCGGCGGCAgaaggg-GCAGCCGCu -3'
miRNA:   3'- agaGCCGCUGUaucgggaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 122621 0.66 0.794453
Target:  5'- gUCUgCGGCGuCGUcgccuucgucgucuGGCCCggGUucuuGGCCGCc -3'
miRNA:   3'- -AGA-GCCGCuGUA--------------UCGGGa-CG----UCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 28296 0.66 0.791745
Target:  5'- --gCGGCGuGCGUGgguguguuaggccccGaCCCUGCGuGCCGCu -3'
miRNA:   3'- agaGCCGC-UGUAU---------------C-GGGACGU-CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 2074 0.66 0.789025
Target:  5'- --gCGGUGGCGgcgagcgccccgcggGGCCCgcGCGGCgGCg -3'
miRNA:   3'- agaGCCGCUGUa--------------UCGGGa-CGUCGgCG- -5'
6382 3' -58.4 NC_001847.1 + 104887 0.66 0.789025
Target:  5'- --gCGGUGGCGgcgagcgccccgcggGGCCCgcGCGGCgGCg -3'
miRNA:   3'- agaGCCGCUGUa--------------UCGGGa-CGUCGgCG- -5'
6382 3' -58.4 NC_001847.1 + 78919 0.66 0.788115
Target:  5'- cCUCGuGCagaugGACGaAGCCCUGCuGGCCc- -3'
miRNA:   3'- aGAGC-CG-----CUGUaUCGGGACG-UCGGcg -5'
6382 3' -58.4 NC_001847.1 + 117815 0.66 0.788115
Target:  5'- gCUCGGU---GUGGCCCUGCA-CCa- -3'
miRNA:   3'- aGAGCCGcugUAUCGGGACGUcGGcg -5'
6382 3' -58.4 NC_001847.1 + 67349 0.66 0.788115
Target:  5'- -aUCGcGCgGACGUGGCCCUcggcucuccGUAGCuCGUc -3'
miRNA:   3'- agAGC-CG-CUGUAUCGGGA---------CGUCG-GCG- -5'
6382 3' -58.4 NC_001847.1 + 8388 0.66 0.788115
Target:  5'- -gUgGGCGucugccGCGUAGgCUacggGCAGCCGCa -3'
miRNA:   3'- agAgCCGC------UGUAUCgGGa---CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 69258 0.66 0.788115
Target:  5'- aCUaCGcGCGGC-UGGCg--GCGGCCGCg -3'
miRNA:   3'- aGA-GC-CGCUGuAUCGggaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 81880 0.66 0.788115
Target:  5'- cCUgGGCGcGCAgcGCCCcgccgagGCGgcGCCGCa -3'
miRNA:   3'- aGAgCCGC-UGUauCGGGa------CGU--CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 93620 0.66 0.788115
Target:  5'- --gCGGCGGCAUAGaCCCa-CGGCCc- -3'
miRNA:   3'- agaGCCGCUGUAUC-GGGacGUCGGcg -5'
6382 3' -58.4 NC_001847.1 + 65512 0.66 0.788115
Target:  5'- ---gGGCGGCGcgcGCagUGCGGCCGCc -3'
miRNA:   3'- agagCCGCUGUau-CGggACGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 76414 0.66 0.788115
Target:  5'- -gUCGGgcCGcCGgaggAGCCCgggGUGGCCGCg -3'
miRNA:   3'- agAGCC--GCuGUa---UCGGGa--CGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.