Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6382 | 5' | -49.8 | NC_001847.1 | + | 105187 | 1.1 | 0.00751 |
Target: 5'- cGUGCAGGUACAUGCUCGCUAAGAAGAc -3' miRNA: 3'- -CACGUCCAUGUACGAGCGAUUCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 133304 | 0.73 | 0.824163 |
Target: 5'- -cGCAGaGUGCGUGC-CGCUGuuGGAGGu -3' miRNA: 3'- caCGUC-CAUGUACGaGCGAU--UCUUCu -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 78400 | 0.71 | 0.903001 |
Target: 5'- cUGCAGGUACAgcuuggccaGCUCGUUGcugagcaucggccGGAAGGc -3' miRNA: 3'- cACGUCCAUGUa--------CGAGCGAU-------------UCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 26043 | 0.7 | 0.933797 |
Target: 5'- gGUGCGGGccAgGUGCUCGCUcGGcAGGc -3' miRNA: 3'- -CACGUCCa-UgUACGAGCGAuUCuUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 65553 | 0.7 | 0.933797 |
Target: 5'- -cGCGgacGGcUACGUGCUCGCgGAGGAGc -3' miRNA: 3'- caCGU---CC-AUGUACGAGCGaUUCUUCu -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 73123 | 0.69 | 0.96104 |
Target: 5'- -cGgAGGUAgccgcCGUGCUCGCggaccuGGAGGAg -3' miRNA: 3'- caCgUCCAU-----GUACGAGCGau----UCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 88293 | 0.68 | 0.971217 |
Target: 5'- cUGCuGGgccgACGcgGCUCGCggcgAGGAGGAa -3' miRNA: 3'- cACGuCCa---UGUa-CGAGCGa---UUCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 4792 | 0.68 | 0.97684 |
Target: 5'- -cGUGGGUGCGUGCggugGCcugGGGGAGAc -3' miRNA: 3'- caCGUCCAUGUACGag--CGa--UUCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 107605 | 0.68 | 0.97684 |
Target: 5'- -cGUGGGUGCGUGCggugGCcugGGGGAGAc -3' miRNA: 3'- caCGUCCAUGUACGag--CGa--UUCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 117040 | 0.67 | 0.981611 |
Target: 5'- -gGCGGGg----GCUCGCcGAGGAGGc -3' miRNA: 3'- caCGUCCauguaCGAGCGaUUCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 39022 | 0.67 | 0.9837 |
Target: 5'- aGUGCGGcuaaUAUAUGCUCGCUGAu---- -3' miRNA: 3'- -CACGUCc---AUGUACGAGCGAUUcuucu -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 59034 | 0.67 | 0.9837 |
Target: 5'- -gGCGGGUGCG-GCg-GCgGAGGAGAg -3' miRNA: 3'- caCGUCCAUGUaCGagCGaUUCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 70079 | 0.67 | 0.988898 |
Target: 5'- -cGCuGGgAC-UGCUCGCgGAGGAGGc -3' miRNA: 3'- caCGuCCaUGuACGAGCGaUUCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 22944 | 0.66 | 0.991573 |
Target: 5'- -cGCAGGUagGCAUcGC-CGCaaacgAGGAGGAg -3' miRNA: 3'- caCGUCCA--UGUA-CGaGCGa----UUCUUCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 115674 | 0.66 | 0.992704 |
Target: 5'- cGUGCGGGUGagcgGCUgCGCgGGGgcGAg -3' miRNA: 3'- -CACGUCCAUgua-CGA-GCGaUUCuuCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 55695 | 0.66 | 0.993711 |
Target: 5'- -aGgGGGUGCGUGCaaacggCGC-GAGggGGc -3' miRNA: 3'- caCgUCCAUGUACGa-----GCGaUUCuuCU- -5' |
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6382 | 5' | -49.8 | NC_001847.1 | + | 60307 | 0.66 | 0.994347 |
Target: 5'- -gGCGGGcgGCAgcgcgcgcgccaccUGCUCGCgcguGAGGAc -3' miRNA: 3'- caCGUCCa-UGU--------------ACGAGCGauu-CUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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