miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 3' -66.8 NC_001847.1 + 14748 0.66 0.41625
Target:  5'- ---cGCgCCGggCCUCGCGCUCGCCg- -3'
miRNA:   3'- gucuCG-GGCgaGGGGCGCGGGCGGac -5'
6383 3' -66.8 NC_001847.1 + 52267 0.66 0.41625
Target:  5'- -cGuGCUCGCgugCCCgCGCGCCgGCUUu -3'
miRNA:   3'- guCuCGGGCGa--GGG-GCGCGGgCGGAc -5'
6383 3' -66.8 NC_001847.1 + 103441 0.66 0.41625
Target:  5'- --cGGCCCGCgccUCCCCcCGCCC-CCg- -3'
miRNA:   3'- gucUCGGGCG---AGGGGcGCGGGcGGac -5'
6383 3' -66.8 NC_001847.1 + 83617 0.66 0.41625
Target:  5'- -uGGGCgCCGC-CCCCGCcuGCCggCGCCg- -3'
miRNA:   3'- guCUCG-GGCGaGGGGCG--CGG--GCGGac -5'
6383 3' -66.8 NC_001847.1 + 103748 0.66 0.41625
Target:  5'- gGGaAGCCCGag-CCCGCGCCCGgggacgaCUGc -3'
miRNA:   3'- gUC-UCGGGCgagGGGCGCGGGCg------GAC- -5'
6383 3' -66.8 NC_001847.1 + 39306 0.66 0.41625
Target:  5'- uGGAGCCCGUgCCUgGCuuGCCCcuGCCg- -3'
miRNA:   3'- gUCUCGGGCGaGGGgCG--CGGG--CGGac -5'
6383 3' -66.8 NC_001847.1 + 76783 0.66 0.41625
Target:  5'- -cGAGgCCGacgUCCCGCGCCUgGCCg- -3'
miRNA:   3'- guCUCgGGCga-GGGGCGCGGG-CGGac -5'
6383 3' -66.8 NC_001847.1 + 82633 0.66 0.41625
Target:  5'- -cGGGCCgCGCggCCgCGCGCuCCGUCa- -3'
miRNA:   3'- guCUCGG-GCGa-GGgGCGCG-GGCGGac -5'
6383 3' -66.8 NC_001847.1 + 628 0.66 0.41625
Target:  5'- --cGGCCCGCgccUCCCCcCGCCC-CCg- -3'
miRNA:   3'- gucUCGGGCG---AGGGGcGCGGGcGGac -5'
6383 3' -66.8 NC_001847.1 + 935 0.66 0.41625
Target:  5'- gGGaAGCCCGag-CCCGCGCCCGgggacgaCUGc -3'
miRNA:   3'- gUC-UCGGGCgagGGGCGCGGGCg------GAC- -5'
6383 3' -66.8 NC_001847.1 + 39827 0.66 0.41625
Target:  5'- -cGGGCCCgagcGCUUCCUGCGUggcgcgcgccagCCGCCg- -3'
miRNA:   3'- guCUCGGG----CGAGGGGCGCG------------GGCGGac -5'
6383 3' -66.8 NC_001847.1 + 16476 0.66 0.41378
Target:  5'- gCAGAGCgCggacaccucucuugCGCcUCCCGCGCgCgGCCUGa -3'
miRNA:   3'- -GUCUCG-G--------------GCGaGGGGCGCG-GgCGGAC- -5'
6383 3' -66.8 NC_001847.1 + 65821 0.66 0.40805
Target:  5'- gCAGcGCCCGaggCCCGCGCCCaaaaggcaGCCg- -3'
miRNA:   3'- -GUCuCGGGCgagGGGCGCGGG--------CGGac -5'
6383 3' -66.8 NC_001847.1 + 9692 0.66 0.40805
Target:  5'- gGGcaAGCCCGCccUCCCCggacGCGCCCugcgcgGCCa- -3'
miRNA:   3'- gUC--UCGGGCG--AGGGG----CGCGGG------CGGac -5'
6383 3' -66.8 NC_001847.1 + 31917 0.66 0.40805
Target:  5'- ---cGCCCGCccgCCCCGgGCCCcgGUCUc -3'
miRNA:   3'- gucuCGGGCGa--GGGGCgCGGG--CGGAc -5'
6383 3' -66.8 NC_001847.1 + 76556 0.66 0.40805
Target:  5'- -cGAGCCCGCgCgCaaaGCgGCCCGCUUa -3'
miRNA:   3'- guCUCGGGCGaGgGg--CG-CGGGCGGAc -5'
6383 3' -66.8 NC_001847.1 + 99041 0.66 0.40805
Target:  5'- aAGGcGCCCaGCgcgUCgCCGCGCuCCGCCa- -3'
miRNA:   3'- gUCU-CGGG-CG---AGgGGCGCG-GGCGGac -5'
6383 3' -66.8 NC_001847.1 + 112505 0.66 0.40805
Target:  5'- gGGcaAGCCCGCccUCCCCggacGCGCCCugcgcgGCCa- -3'
miRNA:   3'- gUC--UCGGGCG--AGGGG----CGCGGG------CGGac -5'
6383 3' -66.8 NC_001847.1 + 133721 0.66 0.407236
Target:  5'- aUAGuGCCuggcgggCGCggggCCgCGUGCCUGCCUGu -3'
miRNA:   3'- -GUCuCGG-------GCGa---GGgGCGCGGGCGGAC- -5'
6383 3' -66.8 NC_001847.1 + 59398 0.66 0.407236
Target:  5'- aCGGAGCCgGCggaggcgcggcggUCaucgCUGCGCCCcggGCCUGg -3'
miRNA:   3'- -GUCUCGGgCG-------------AGg---GGCGCGGG---CGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.