miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 121693 0.67 0.972612
Target:  5'- aGCAGGUGCGCGccCGcuagauacagccAGCGCAg--- -3'
miRNA:   3'- cCGUCCACGUGCuaGC------------UCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 53234 0.67 0.972612
Target:  5'- -cCAGGUGCGCGAggcCGcAGCucGCGUUUa -3'
miRNA:   3'- ccGUCCACGUGCUa--GC-UCG--UGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 83579 0.67 0.972612
Target:  5'- uGGUAGGcGCccGCGAgccCGAGCACGc--- -3'
miRNA:   3'- -CCGUCCaCG--UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 13828 0.67 0.977923
Target:  5'- cGGCGugugacGGUGCGCGA--GGGCACGc--- -3'
miRNA:   3'- -CCGU------CCACGUGCUagCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 95234 0.67 0.972612
Target:  5'- gGGCgcgaucGGGgGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- -CCG------UCCaCGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 55046 0.67 0.975372
Target:  5'- cGCAGGUGgcCGCGuUCGucGCGCggUUCa -3'
miRNA:   3'- cCGUCCAC--GUGCuAGCu-CGUGuaAAG- -5'
6383 5' -51.2 NC_001847.1 + 97803 0.67 0.975372
Target:  5'- cGCAcGGUcGCGCGcguggccgcGUCGGGCGCGUg-- -3'
miRNA:   3'- cCGU-CCA-CGUGC---------UAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 99380 0.67 0.969636
Target:  5'- aGCGGGUGCGaguCGAUgauaGAGCGCGc--- -3'
miRNA:   3'- cCGUCCACGU---GCUAg---CUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 36183 0.68 0.963004
Target:  5'- cGGC-GGUGCGCGG-CGAGgcCGCGUa-- -3'
miRNA:   3'- -CCGuCCACGUGCUaGCUC--GUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 58387 0.68 0.955424
Target:  5'- aGCGGGUGC-CGG-CGGGCAgCAgcUCu -3'
miRNA:   3'- cCGUCCACGuGCUaGCUCGU-GUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 95786 0.68 0.951265
Target:  5'- cGCGGG-GgGCGGcgCGGGCGCAUUa- -3'
miRNA:   3'- cCGUCCaCgUGCUa-GCUCGUGUAAag -5'
6383 5' -51.2 NC_001847.1 + 70708 0.68 0.951265
Target:  5'- cGGCGGGgGCGCccgcggCGAGCGCGa--- -3'
miRNA:   3'- -CCGUCCaCGUGcua---GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 85776 0.68 0.946854
Target:  5'- gGGCAgcggccgaugcGGUGCGCGucgagggugCGGGCGCGUg-- -3'
miRNA:   3'- -CCGU-----------CCACGUGCua-------GCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 53689 0.68 0.951265
Target:  5'- cGCAagauGUGCGCGcgCGAGCGCGc--- -3'
miRNA:   3'- cCGUc---CACGUGCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 68123 0.68 0.963004
Target:  5'- cGguGGU-CGCGggCGAGCGCGcgUCu -3'
miRNA:   3'- cCguCCAcGUGCuaGCUCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 52272 0.68 0.955424
Target:  5'- cGGCGcGcccGCACGggCGAGCACGUg-- -3'
miRNA:   3'- -CCGUcCa--CGUGCuaGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 72751 0.69 0.942188
Target:  5'- cGGCGGGUGCGCuaaagacgcGUCGGGCGg----- -3'
miRNA:   3'- -CCGUCCACGUGc--------UAGCUCGUguaaag -5'
6383 5' -51.2 NC_001847.1 + 96640 0.69 0.937264
Target:  5'- cGGCGGGUacgcgucguGCGCGGgggccggCGGGUACGcgUCg -3'
miRNA:   3'- -CCGUCCA---------CGUGCUa------GCUCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 72219 0.69 0.937264
Target:  5'- aGGCAGG-GCACGccCGGGC-CGUcugUCu -3'
miRNA:   3'- -CCGUCCaCGUGCuaGCUCGuGUAa--AG- -5'
6383 5' -51.2 NC_001847.1 + 16706 0.69 0.920927
Target:  5'- cGGCAGGcGCA-GA-CGAGCACGa--- -3'
miRNA:   3'- -CCGUCCaCGUgCUaGCUCGUGUaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.