miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 96640 0.69 0.937264
Target:  5'- cGGCGGGUacgcgucguGCGCGGgggccggCGGGUACGcgUCg -3'
miRNA:   3'- -CCGUCCA---------CGUGCUa------GCUCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 88397 0.69 0.920927
Target:  5'- cGGCGGGcggGCGCGccGUCGGGUACc---- -3'
miRNA:   3'- -CCGUCCa--CGUGC--UAGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 72219 0.69 0.937264
Target:  5'- aGGCAGG-GCACGccCGGGC-CGUcugUCu -3'
miRNA:   3'- -CCGUCCaCGUGCuaGCUCGuGUAa--AG- -5'
6383 5' -51.2 NC_001847.1 + 3259 0.7 0.913734
Target:  5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3'
miRNA:   3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5'
6383 5' -51.2 NC_001847.1 + 20806 0.7 0.888513
Target:  5'- cGGCGGGUGCuuCGG-CG-GCGC-UUUCg -3'
miRNA:   3'- -CCGUCCACGu-GCUaGCuCGUGuAAAG- -5'
6383 5' -51.2 NC_001847.1 + 56617 0.7 0.888513
Target:  5'- aGGCcgAGGc-CGCGGUCGAGCGCGUc-- -3'
miRNA:   3'- -CCG--UCCacGUGCUAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 86018 0.7 0.914959
Target:  5'- aGGCGGG-GCGCGGcggGAGCGCGa--- -3'
miRNA:   3'- -CCGUCCaCGUGCUag-CUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 18638 0.7 0.902245
Target:  5'- aGGCagAGGUGCuCGG-CGAGCGCGa--- -3'
miRNA:   3'- -CCG--UCCACGuGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 30336 0.7 0.902245
Target:  5'- cGGCGGGcUGgACGA-CGAGCACc---- -3'
miRNA:   3'- -CCGUCC-ACgUGCUaGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 106072 0.7 0.913734
Target:  5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3'
miRNA:   3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5'
6383 5' -51.2 NC_001847.1 + 52288 0.7 0.914959
Target:  5'- cGGCuuuGuGUGCGCGAccgCGGGCGCGg--- -3'
miRNA:   3'- -CCGu--C-CACGUGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 70169 0.7 0.908731
Target:  5'- uGCAgacGGUGCugGAuucguUCGAGCGCGg--- -3'
miRNA:   3'- cCGU---CCACGugCU-----AGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 17152 0.7 0.888513
Target:  5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3'
miRNA:   3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5'
6383 5' -51.2 NC_001847.1 + 14568 0.7 0.902245
Target:  5'- cGCGGGUGCugG--CGGGCGCGc--- -3'
miRNA:   3'- cCGUCCACGugCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 59552 0.71 0.881273
Target:  5'- uGGCuGGUGCugGGccUgGAGCACuUUUUu -3'
miRNA:   3'- -CCGuCCACGugCU--AgCUCGUGuAAAG- -5'
6383 5' -51.2 NC_001847.1 + 57983 0.71 0.858126
Target:  5'- aGGCAGGaccgGCGCGGUgGcGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa---CGUGCUAgC-UCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 81821 0.71 0.882008
Target:  5'- cGGCGGGgcgcgccgucugucGCccgccgcacuggcgGCGAUCGAGCGCGcgUUCg -3'
miRNA:   3'- -CCGUCCa-------------CG--------------UGCUAGCUCGUGUa-AAG- -5'
6383 5' -51.2 NC_001847.1 + 8725 0.71 0.848294
Target:  5'- gGGCGGG-GCAUGugugugucaccCGAGCGCAUUUg -3'
miRNA:   3'- -CCGUCCaCGUGCua---------GCUCGUGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 32891 0.71 0.866074
Target:  5'- gGGCAcGGUGCGCGccgcgcgCGAGCGCc---- -3'
miRNA:   3'- -CCGU-CCACGUGCua-----GCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 77699 0.71 0.873792
Target:  5'- aGGCGGcGUGCGCGcgCGcGCugGUgcgCg -3'
miRNA:   3'- -CCGUC-CACGUGCuaGCuCGugUAaa-G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.