Results 41 - 60 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 95786 | 0.68 | 0.951265 |
Target: 5'- cGCGGG-GgGCGGcgCGGGCGCAUUa- -3' miRNA: 3'- cCGUCCaCgUGCUa-GCUCGUGUAAag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 58387 | 0.68 | 0.955424 |
Target: 5'- aGCGGGUGC-CGG-CGGGCAgCAgcUCu -3' miRNA: 3'- cCGUCCACGuGCUaGCUCGU-GUaaAG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 52272 | 0.68 | 0.955424 |
Target: 5'- cGGCGcGcccGCACGggCGAGCACGUg-- -3' miRNA: 3'- -CCGUcCa--CGUGCuaGCUCGUGUAaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 36183 | 0.68 | 0.963004 |
Target: 5'- cGGC-GGUGCGCGG-CGAGgcCGCGUa-- -3' miRNA: 3'- -CCGuCCACGUGCUaGCUC--GUGUAaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 68123 | 0.68 | 0.963004 |
Target: 5'- cGguGGU-CGCGggCGAGCGCGcgUCu -3' miRNA: 3'- cCguCCAcGUGCuaGCUCGUGUaaAG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 99380 | 0.67 | 0.969636 |
Target: 5'- aGCGGGUGCGaguCGAUgauaGAGCGCGc--- -3' miRNA: 3'- cCGUCCACGU---GCUAg---CUCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 37005 | 0.67 | 0.969636 |
Target: 5'- cGGCGGcG-GCGCGcUCGAGCugAc--- -3' miRNA: 3'- -CCGUC-CaCGUGCuAGCUCGugUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 41823 | 0.67 | 0.969636 |
Target: 5'- gGGCGGGcgGCGCGGgucccagggcUgGGGCACGUc-- -3' miRNA: 3'- -CCGUCCa-CGUGCU----------AgCUCGUGUAaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 30236 | 0.67 | 0.969636 |
Target: 5'- gGGCcgAGGUGCGCGuGUCGcuGGCgGCGUUg- -3' miRNA: 3'- -CCG--UCCACGUGC-UAGC--UCG-UGUAAag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 103366 | 0.67 | 0.972034 |
Target: 5'- aGGCAGGccguguuggccgGCGCGcgCGGGUGCAc--- -3' miRNA: 3'- -CCGUCCa-----------CGUGCuaGCUCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 34822 | 0.67 | 0.972612 |
Target: 5'- cGGCAGGccgaccgggcGCugGAggCGAGCGCGc--- -3' miRNA: 3'- -CCGUCCa---------CGugCUa-GCUCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 66569 | 0.67 | 0.972612 |
Target: 5'- cGGCAGcGUGUucguGCGAuacuugcccUCGGGCGCGg--- -3' miRNA: 3'- -CCGUC-CACG----UGCU---------AGCUCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 90338 | 0.67 | 0.972612 |
Target: 5'- gGGCGcGGUGcCGCGcUCG-GCGC-UUUCg -3' miRNA: 3'- -CCGU-CCAC-GUGCuAGCuCGUGuAAAG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 95234 | 0.67 | 0.972612 |
Target: 5'- gGGCgcgaucGGGgGCGCGAUCGGGgGCGc--- -3' miRNA: 3'- -CCG------UCCaCGUGCUAGCUCgUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 38503 | 0.67 | 0.972612 |
Target: 5'- cGGgGGGcgGCGCGGUCGccGGCGCu---- -3' miRNA: 3'- -CCgUCCa-CGUGCUAGC--UCGUGuaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 83579 | 0.67 | 0.972612 |
Target: 5'- uGGUAGGcGCccGCGAgccCGAGCACGc--- -3' miRNA: 3'- -CCGUCCaCG--UGCUa--GCUCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 53234 | 0.67 | 0.972612 |
Target: 5'- -cCAGGUGCGCGAggcCGcAGCucGCGUUUa -3' miRNA: 3'- ccGUCCACGUGCUa--GC-UCG--UGUAAAg -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 121693 | 0.67 | 0.972612 |
Target: 5'- aGCAGGUGCGCGccCGcuagauacagccAGCGCAg--- -3' miRNA: 3'- cCGUCCACGUGCuaGC------------UCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 95198 | 0.67 | 0.972612 |
Target: 5'- gGGCgcgaucGGGgGCGCGAUCGGGgGCGc--- -3' miRNA: 3'- -CCG------UCCaCGUGCUAGCUCgUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 55046 | 0.67 | 0.975372 |
Target: 5'- cGCAGGUGgcCGCGuUCGucGCGCggUUCa -3' miRNA: 3'- cCGUCCAC--GUGCuAGCu-CGUGuaAAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home