Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 56368 | 0.66 | 0.980274 |
Target: 5'- cGCGGGcgGCACGAccUCG-GCGCucgggUCg -3' miRNA: 3'- cCGUCCa-CGUGCU--AGCuCGUGuaa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 56617 | 0.7 | 0.888513 |
Target: 5'- aGGCcgAGGc-CGCGGUCGAGCGCGUc-- -3' miRNA: 3'- -CCG--UCCacGUGCUAGCUCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 57668 | 0.66 | 0.987849 |
Target: 5'- gGGCAGGcgguggGCACGGUgGuGCugGg--- -3' miRNA: 3'- -CCGUCCa-----CGUGCUAgCuCGugUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 57983 | 0.71 | 0.858126 |
Target: 5'- aGGCAGGaccgGCGCGGUgGcGGCGCAg--- -3' miRNA: 3'- -CCGUCCa---CGUGCUAgC-UCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 58387 | 0.68 | 0.955424 |
Target: 5'- aGCGGGUGC-CGG-CGGGCAgCAgcUCu -3' miRNA: 3'- cCGUCCACGuGCUaGCUCGU-GUaaAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 59552 | 0.71 | 0.881273 |
Target: 5'- uGGCuGGUGCugGGccUgGAGCACuUUUUu -3' miRNA: 3'- -CCGuCCACGugCU--AgCUCGUGuAAAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 61318 | 0.77 | 0.55771 |
Target: 5'- cGCGGGUGCGCGGggcggggCGGGCGCGc--- -3' miRNA: 3'- cCGUCCACGUGCUa------GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 61563 | 0.67 | 0.977923 |
Target: 5'- cGGCAcGGUGCGCGAggUGcAGaCACAg--- -3' miRNA: 3'- -CCGU-CCACGUGCUa-GC-UC-GUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 66569 | 0.67 | 0.972612 |
Target: 5'- cGGCAGcGUGUucguGCGAuacuugcccUCGGGCGCGg--- -3' miRNA: 3'- -CCGUC-CACG----UGCU---------AGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 67218 | 0.74 | 0.747741 |
Target: 5'- cGGCGGGcGCGCGGUCGAaCGCcgUg- -3' miRNA: 3'- -CCGUCCaCGUGCUAGCUcGUGuaAag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 68123 | 0.68 | 0.963004 |
Target: 5'- cGguGGU-CGCGggCGAGCGCGcgUCu -3' miRNA: 3'- cCguCCAcGUGCuaGCUCGUGUaaAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 70169 | 0.7 | 0.908731 |
Target: 5'- uGCAgacGGUGCugGAuucguUCGAGCGCGg--- -3' miRNA: 3'- cCGU---CCACGugCU-----AGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 70256 | 0.66 | 0.986211 |
Target: 5'- cGGCGGGcGCGCGGcguugcucUCGGcGCGCGc--- -3' miRNA: 3'- -CCGUCCaCGUGCU--------AGCU-CGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 70708 | 0.68 | 0.951265 |
Target: 5'- cGGCGGGgGCGCccgcggCGAGCGCGa--- -3' miRNA: 3'- -CCGUCCaCGUGcua---GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 72219 | 0.69 | 0.937264 |
Target: 5'- aGGCAGG-GCACGccCGGGC-CGUcugUCu -3' miRNA: 3'- -CCGUCCaCGUGCuaGCUCGuGUAa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 72751 | 0.69 | 0.942188 |
Target: 5'- cGGCGGGUGCGCuaaagacgcGUCGGGCGg----- -3' miRNA: 3'- -CCGUCCACGUGc--------UAGCUCGUguaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 74740 | 0.66 | 0.980274 |
Target: 5'- cGGCGcuUGCGCGcgCGAGCAUg---- -3' miRNA: 3'- -CCGUccACGUGCuaGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 76736 | 0.73 | 0.767723 |
Target: 5'- gGGCGGGgaaGgACGGUCGGGCGCu---- -3' miRNA: 3'- -CCGUCCa--CgUGCUAGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 77699 | 0.71 | 0.873792 |
Target: 5'- aGGCGGcGUGCGCGcgCGcGCugGUgcgCg -3' miRNA: 3'- -CCGUC-CACGUGCuaGCuCGugUAaa-G- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 80201 | 0.73 | 0.757793 |
Target: 5'- gGGCGGGUGCGCcg-CGaAGCGCAgggCg -3' miRNA: 3'- -CCGUCCACGUGcuaGC-UCGUGUaaaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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