miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 81169 0.76 0.600075
Target:  5'- gGGCGgaagacguGGUGCGCG-UCGAGCACAg--- -3'
miRNA:   3'- -CCGU--------CCACGUGCuAGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 81821 0.71 0.882008
Target:  5'- cGGCGGGgcgcgccgucugucGCccgccgcacuggcgGCGAUCGAGCGCGcgUUCg -3'
miRNA:   3'- -CCGUCCa-------------CG--------------UGCUAGCUCGUGUa-AAG- -5'
6383 5' -51.2 NC_001847.1 + 83579 0.67 0.972612
Target:  5'- uGGUAGGcGCccGCGAgccCGAGCACGc--- -3'
miRNA:   3'- -CCGUCCaCG--UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 85776 0.68 0.946854
Target:  5'- gGGCAgcggccgaugcGGUGCGCGucgagggugCGGGCGCGUg-- -3'
miRNA:   3'- -CCGU-----------CCACGUGCua-------GCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 86018 0.7 0.914959
Target:  5'- aGGCGGG-GCGCGGcggGAGCGCGa--- -3'
miRNA:   3'- -CCGUCCaCGUGCUag-CUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 88397 0.69 0.920927
Target:  5'- cGGCGGGcggGCGCGccGUCGGGUACc---- -3'
miRNA:   3'- -CCGUCCa--CGUGC--UAGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 90338 0.67 0.972612
Target:  5'- gGGCGcGGUGcCGCGcUCG-GCGC-UUUCg -3'
miRNA:   3'- -CCGU-CCAC-GUGCuAGCuCGUGuAAAG- -5'
6383 5' -51.2 NC_001847.1 + 91669 0.66 0.980274
Target:  5'- cGGCGGGa-CGCGAUCGcGCGCu---- -3'
miRNA:   3'- -CCGUCCacGUGCUAGCuCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 95098 0.74 0.70653
Target:  5'- uGGCGGGggGCGCGAUUGGGgGCGc--- -3'
miRNA:   3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 95167 0.78 0.485966
Target:  5'- uGGCGGGggGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 95198 0.67 0.972612
Target:  5'- gGGCgcgaucGGGgGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- -CCG------UCCaCGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 95234 0.67 0.972612
Target:  5'- gGGCgcgaucGGGgGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- -CCG------UCCaCGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 95266 0.66 0.982432
Target:  5'- -uCGGGgGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- ccGUCCaCGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 95786 0.68 0.951265
Target:  5'- cGCGGG-GgGCGGcgCGGGCGCAUUa- -3'
miRNA:   3'- cCGUCCaCgUGCUa-GCUCGUGUAAag -5'
6383 5' -51.2 NC_001847.1 + 96640 0.69 0.937264
Target:  5'- cGGCGGGUacgcgucguGCGCGGgggccggCGGGUACGcgUCg -3'
miRNA:   3'- -CCGUCCA---------CGUGCUa------GCUCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 97803 0.67 0.975372
Target:  5'- cGCAcGGUcGCGCGcguggccgcGUCGGGCGCGUg-- -3'
miRNA:   3'- cCGU-CCA-CGUGC---------UAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 98583 0.66 0.984408
Target:  5'- aGGUAGGcGCGCGG-CGccAGCGCGUc-- -3'
miRNA:   3'- -CCGUCCaCGUGCUaGC--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 99380 0.67 0.969636
Target:  5'- aGCGGGUGCGaguCGAUgauaGAGCGCGc--- -3'
miRNA:   3'- cCGUCCACGU---GCUAg---CUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 100883 0.66 0.989332
Target:  5'- cGGCAGGgGCGCGGccggCGGGagACGgggUCg -3'
miRNA:   3'- -CCGUCCaCGUGCUa---GCUCg-UGUaa-AG- -5'
6383 5' -51.2 NC_001847.1 + 101096 0.67 0.975372
Target:  5'- cGGCGGG---GCGggCGGGCGCGUUc- -3'
miRNA:   3'- -CCGUCCacgUGCuaGCUCGUGUAAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.