miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 70256 0.66 0.986211
Target:  5'- cGGCGGGcGCGCGGcguugcucUCGGcGCGCGc--- -3'
miRNA:   3'- -CCGUCCaCGUGCU--------AGCU-CGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 70169 0.7 0.908731
Target:  5'- uGCAgacGGUGCugGAuucguUCGAGCGCGg--- -3'
miRNA:   3'- cCGU---CCACGugCU-----AGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 68123 0.68 0.963004
Target:  5'- cGguGGU-CGCGggCGAGCGCGcgUCu -3'
miRNA:   3'- cCguCCAcGUGCuaGCUCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 67218 0.74 0.747741
Target:  5'- cGGCGGGcGCGCGGUCGAaCGCcgUg- -3'
miRNA:   3'- -CCGUCCaCGUGCUAGCUcGUGuaAag -5'
6383 5' -51.2 NC_001847.1 + 66569 0.67 0.972612
Target:  5'- cGGCAGcGUGUucguGCGAuacuugcccUCGGGCGCGg--- -3'
miRNA:   3'- -CCGUC-CACG----UGCU---------AGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 61563 0.67 0.977923
Target:  5'- cGGCAcGGUGCGCGAggUGcAGaCACAg--- -3'
miRNA:   3'- -CCGU-CCACGUGCUa-GC-UC-GUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 61318 0.77 0.55771
Target:  5'- cGCGGGUGCGCGGggcggggCGGGCGCGc--- -3'
miRNA:   3'- cCGUCCACGUGCUa------GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 59552 0.71 0.881273
Target:  5'- uGGCuGGUGCugGGccUgGAGCACuUUUUu -3'
miRNA:   3'- -CCGuCCACGugCU--AgCUCGUGuAAAG- -5'
6383 5' -51.2 NC_001847.1 + 58387 0.68 0.955424
Target:  5'- aGCGGGUGC-CGG-CGGGCAgCAgcUCu -3'
miRNA:   3'- cCGUCCACGuGCUaGCUCGU-GUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 57983 0.71 0.858126
Target:  5'- aGGCAGGaccgGCGCGGUgGcGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa---CGUGCUAgC-UCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 57668 0.66 0.987849
Target:  5'- gGGCAGGcgguggGCACGGUgGuGCugGg--- -3'
miRNA:   3'- -CCGUCCa-----CGUGCUAgCuCGugUaaag -5'
6383 5' -51.2 NC_001847.1 + 56617 0.7 0.888513
Target:  5'- aGGCcgAGGc-CGCGGUCGAGCGCGUc-- -3'
miRNA:   3'- -CCG--UCCacGUGCUAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 56368 0.66 0.980274
Target:  5'- cGCGGGcgGCACGAccUCG-GCGCucgggUCg -3'
miRNA:   3'- cCGUCCa-CGUGCU--AGCuCGUGuaa--AG- -5'
6383 5' -51.2 NC_001847.1 + 55046 0.67 0.975372
Target:  5'- cGCAGGUGgcCGCGuUCGucGCGCggUUCa -3'
miRNA:   3'- cCGUCCAC--GUGCuAGCu-CGUGuaAAG- -5'
6383 5' -51.2 NC_001847.1 + 55007 0.72 0.824176
Target:  5'- uGGCGGcGcuggaguccaUGCGCGcGUCGGGCGCGUUUg -3'
miRNA:   3'- -CCGUC-C----------ACGUGC-UAGCUCGUGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 53689 0.68 0.951265
Target:  5'- cGCAagauGUGCGCGcgCGAGCGCGc--- -3'
miRNA:   3'- cCGUc---CACGUGCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 53234 0.67 0.972612
Target:  5'- -cCAGGUGCGCGAggcCGcAGCucGCGUUUa -3'
miRNA:   3'- ccGUCCACGUGCUa--GC-UCG--UGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 52288 0.7 0.914959
Target:  5'- cGGCuuuGuGUGCGCGAccgCGGGCGCGg--- -3'
miRNA:   3'- -CCGu--C-CACGUGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 52272 0.68 0.955424
Target:  5'- cGGCGcGcccGCACGggCGAGCACGUg-- -3'
miRNA:   3'- -CCGUcCa--CGUGCuaGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 51534 0.66 0.989332
Target:  5'- aGGCGGGggcgGCGCccaggcGUCG-GCGCAgcUCg -3'
miRNA:   3'- -CCGUCCa---CGUGc-----UAGCuCGUGUaaAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.