miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 67218 0.74 0.747741
Target:  5'- cGGCGGGcGCGCGGUCGAaCGCcgUg- -3'
miRNA:   3'- -CCGUCCaCGUGCUAGCUcGUGuaAag -5'
6383 5' -51.2 NC_001847.1 + 30368 0.67 0.977923
Target:  5'- uGGCGGGccacucgGCGCuGGUgCGGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa------CGUG-CUA-GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 13828 0.67 0.977923
Target:  5'- cGGCGugugacGGUGCGCGA--GGGCACGc--- -3'
miRNA:   3'- -CCGU------CCACGUGCUagCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 37005 0.67 0.969636
Target:  5'- cGGCGGcG-GCGCGcUCGAGCugAc--- -3'
miRNA:   3'- -CCGUC-CaCGUGCuAGCUCGugUaaag -5'
6383 5' -51.2 NC_001847.1 + 70169 0.7 0.908731
Target:  5'- uGCAgacGGUGCugGAuucguUCGAGCGCGg--- -3'
miRNA:   3'- cCGU---CCACGugCU-----AGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 26761 0.66 0.986211
Target:  5'- cGCGGGUGCGCGGccuggUCaGuGCGCGc--- -3'
miRNA:   3'- cCGUCCACGUGCU-----AG-CuCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 108102 0.66 0.980274
Target:  5'- gGGaCGGGgGUACGG-CGAGCGCGa--- -3'
miRNA:   3'- -CC-GUCCaCGUGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 56617 0.7 0.888513
Target:  5'- aGGCcgAGGc-CGCGGUCGAGCGCGUc-- -3'
miRNA:   3'- -CCG--UCCacGUGCUAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 90338 0.67 0.972612
Target:  5'- gGGCGcGGUGcCGCGcUCG-GCGC-UUUCg -3'
miRNA:   3'- -CCGU-CCAC-GUGCuAGCuCGUGuAAAG- -5'
6383 5' -51.2 NC_001847.1 + 34822 0.67 0.972612
Target:  5'- cGGCAGGccgaccgggcGCugGAggCGAGCGCGc--- -3'
miRNA:   3'- -CCGUCCa---------CGugCUa-GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 17152 0.7 0.888513
Target:  5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3'
miRNA:   3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5'
6383 5' -51.2 NC_001847.1 + 81821 0.71 0.882008
Target:  5'- cGGCGGGgcgcgccgucugucGCccgccgcacuggcgGCGAUCGAGCGCGcgUUCg -3'
miRNA:   3'- -CCGUCCa-------------CG--------------UGCUAGCUCGUGUa-AAG- -5'
6383 5' -51.2 NC_001847.1 + 124912 0.66 0.989191
Target:  5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3'
miRNA:   3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 57668 0.66 0.987849
Target:  5'- gGGCAGGcgguggGCACGGUgGuGCugGg--- -3'
miRNA:   3'- -CCGUCCa-----CGUGCUAgCuCGugUaaag -5'
6383 5' -51.2 NC_001847.1 + 61563 0.67 0.977923
Target:  5'- cGGCAcGGUGCGCGAggUGcAGaCACAg--- -3'
miRNA:   3'- -CCGU-CCACGUGCUa-GC-UC-GUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 23706 0.69 0.920927
Target:  5'- -aCGGG-GCGCGGUCG-GCGCAgaggUCg -3'
miRNA:   3'- ccGUCCaCGUGCUAGCuCGUGUaa--AG- -5'
6383 5' -51.2 NC_001847.1 + 106072 0.7 0.913734
Target:  5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3'
miRNA:   3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5'
6383 5' -51.2 NC_001847.1 + 77699 0.71 0.873792
Target:  5'- aGGCGGcGUGCGCGcgCGcGCugGUgcgCg -3'
miRNA:   3'- -CCGUC-CACGUGCuaGCuCGugUAaa-G- -5'
6383 5' -51.2 NC_001847.1 + 41823 0.67 0.969636
Target:  5'- gGGCGGGcgGCGCGGgucccagggcUgGGGCACGUc-- -3'
miRNA:   3'- -CCGUCCa-CGUGCU----------AgCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 101096 0.67 0.975372
Target:  5'- cGGCGGG---GCGggCGGGCGCGUUc- -3'
miRNA:   3'- -CCGUCCacgUGCuaGCUCGUGUAAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.