miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6384 3' -63.1 NC_001847.1 + 87882 0.66 0.593276
Target:  5'- uGGCCGCgCggcuuucugggcggGGCUUUgcacaggggCGGGGCGUg -3'
miRNA:   3'- gCCGGCGgGaa------------UCGAGGa--------GCCCCGCG- -5'
6384 3' -63.1 NC_001847.1 + 50836 0.66 0.592299
Target:  5'- gGcGCUGCCC---GCgCCggGGGGCGCu -3'
miRNA:   3'- gC-CGGCGGGaauCGaGGagCCCCGCG- -5'
6384 3' -63.1 NC_001847.1 + 47886 0.66 0.592299
Target:  5'- gCGcGCgCGCCCgc-GCg-C-CGGGGCGCa -3'
miRNA:   3'- -GC-CG-GCGGGaauCGagGaGCCCCGCG- -5'
6384 3' -63.1 NC_001847.1 + 23457 0.66 0.592299
Target:  5'- gGGUCGCCgCguccGCcgCCUCGGccaucgcgcucGGCGCg -3'
miRNA:   3'- gCCGGCGG-Gaau-CGa-GGAGCC-----------CCGCG- -5'
6384 3' -63.1 NC_001847.1 + 123858 0.66 0.592299
Target:  5'- aGGCCccgagacccccgGCCCUgaGGC-CCU-GGGGCGg -3'
miRNA:   3'- gCCGG------------CGGGAa-UCGaGGAgCCCCGCg -5'
6384 3' -63.1 NC_001847.1 + 16057 0.66 0.592299
Target:  5'- gCGGCgGCCgc-GGCgCCUCugcuGGGCGCc -3'
miRNA:   3'- -GCCGgCGGgaaUCGaGGAGc---CCCGCG- -5'
6384 3' -63.1 NC_001847.1 + 62484 0.66 0.592299
Target:  5'- gGGUCGCCggcgGGCggCCgCGGGGUGg -3'
miRNA:   3'- gCCGGCGGgaa-UCGa-GGaGCCCCGCg -5'
6384 3' -63.1 NC_001847.1 + 55340 0.66 0.592299
Target:  5'- uGGCCGCUCgcGGCggugCUgaacgcgcCGcGGGCGCc -3'
miRNA:   3'- gCCGGCGGGaaUCGa---GGa-------GC-CCCGCG- -5'
6384 3' -63.1 NC_001847.1 + 80480 0.66 0.592299
Target:  5'- gGGCCGCgCUccccGUUCCgcagCGcGGCGCu -3'
miRNA:   3'- gCCGGCGgGAau--CGAGGa---GCcCCGCG- -5'
6384 3' -63.1 NC_001847.1 + 85164 0.66 0.591324
Target:  5'- aCGG-CGCCCUcgUGGCUCUcgUCGaaggcuaGGuGCGCg -3'
miRNA:   3'- -GCCgGCGGGA--AUCGAGG--AGC-------CC-CGCG- -5'
6384 3' -63.1 NC_001847.1 + 120052 0.66 0.591324
Target:  5'- -cGCC-CCCUUugcuccuagccccGGCUCCUgccgagccgcgCGGGGCGg -3'
miRNA:   3'- gcCGGcGGGAA-------------UCGAGGA-----------GCCCCGCg -5'
6384 3' -63.1 NC_001847.1 + 11828 0.66 0.586449
Target:  5'- aGGCCuCCCUcUGGCguaaggCCUCuggcgccgcccugcgGGcGGCGCg -3'
miRNA:   3'- gCCGGcGGGA-AUCGa-----GGAG---------------CC-CCGCG- -5'
6384 3' -63.1 NC_001847.1 + 83570 0.66 0.582554
Target:  5'- aCGGCUGCCCc-GGCgCCgCGGaaGCGCu -3'
miRNA:   3'- -GCCGGCGGGaaUCGaGGaGCCc-CGCG- -5'
6384 3' -63.1 NC_001847.1 + 125503 0.66 0.582554
Target:  5'- cCGGCUGCUCgagcGGCgggCCggcgCGgcggcGGGCGCa -3'
miRNA:   3'- -GCCGGCGGGaa--UCGa--GGa---GC-----CCCGCG- -5'
6384 3' -63.1 NC_001847.1 + 42894 0.66 0.582554
Target:  5'- uGGgCGCCUUU-GCgaCUCGGGGCu- -3'
miRNA:   3'- gCCgGCGGGAAuCGagGAGCCCCGcg -5'
6384 3' -63.1 NC_001847.1 + 66222 0.66 0.582554
Target:  5'- gCGGCCGCCgCgccgaacCUCagcgCGGcGGCGCu -3'
miRNA:   3'- -GCCGGCGG-Gaauc---GAGga--GCC-CCGCG- -5'
6384 3' -63.1 NC_001847.1 + 133477 0.66 0.582554
Target:  5'- uGGCCGCgCgacGGCccggCCgUCGGgcaGGCGCa -3'
miRNA:   3'- gCCGGCGgGaa-UCGa---GG-AGCC---CCGCG- -5'
6384 3' -63.1 NC_001847.1 + 129491 0.66 0.582554
Target:  5'- aCGGCgCGCauCCgcuggacgGGCUCUUUGGcGCGCg -3'
miRNA:   3'- -GCCG-GCG--GGaa------UCGAGGAGCCcCGCG- -5'
6384 3' -63.1 NC_001847.1 + 36953 0.66 0.582554
Target:  5'- gCGGCCGUCgCacGGCUgCCUagaggacuGGGCGCg -3'
miRNA:   3'- -GCCGGCGG-GaaUCGA-GGAgc------CCCGCG- -5'
6384 3' -63.1 NC_001847.1 + 30664 0.66 0.582554
Target:  5'- uGGCCGCgCgacGGCccggCCgUCGGgcaGGCGCa -3'
miRNA:   3'- gCCGGCGgGaa-UCGa---GG-AGCC---CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.