miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6384 5' -52.7 NC_001847.1 + 123492 0.66 0.975144
Target:  5'- uGGGgCCGCCGcAAGCGGGGccgGgGCcAGg -3'
miRNA:   3'- -CCCgGGCGGC-UUUGUUUCa--CgUGaUC- -5'
6384 5' -52.7 NC_001847.1 + 52020 0.66 0.975144
Target:  5'- cGGCggCCGCCGAG--GAGGUGCuACgcgAGg -3'
miRNA:   3'- cCCG--GGCGGCUUugUUUCACG-UGa--UC- -5'
6384 5' -52.7 NC_001847.1 + 103182 0.66 0.975144
Target:  5'- gGGGCCCGCCccgcGCGccGcGCGCcGGa -3'
miRNA:   3'- -CCCGGGCGGcuu-UGUuuCaCGUGaUC- -5'
6384 5' -52.7 NC_001847.1 + 73785 0.66 0.975144
Target:  5'- -cGCCuCGCCGguGCGGggcugccugccGGUGgGCUAGg -3'
miRNA:   3'- ccCGG-GCGGCuuUGUU-----------UCACgUGAUC- -5'
6384 5' -52.7 NC_001847.1 + 111790 0.66 0.975144
Target:  5'- cGGGCCCGggggCGGgcaGACGGGGguggGgGCUGGg -3'
miRNA:   3'- -CCCGGGCg---GCU---UUGUUUCa---CgUGAUC- -5'
6384 5' -52.7 NC_001847.1 + 117044 0.66 0.975144
Target:  5'- gGGGCUCGCCGAG---GAG-GCGgaAGc -3'
miRNA:   3'- -CCCGGGCGGCUUuguUUCaCGUgaUC- -5'
6384 5' -52.7 NC_001847.1 + 369 0.66 0.975144
Target:  5'- gGGGCCCGCCccgcGCGccGcGCGCcGGa -3'
miRNA:   3'- -CCCGGGCGGcuu-UGUuuCaCGUGaUC- -5'
6384 5' -52.7 NC_001847.1 + 26952 0.66 0.97488
Target:  5'- cGGCggUCGCCGGAguuggaaAUGAGGUGCGCg-- -3'
miRNA:   3'- cCCG--GGCGGCUU-------UGUUUCACGUGauc -5'
6384 5' -52.7 NC_001847.1 + 88852 0.66 0.97488
Target:  5'- cGGCUgGCCGuagaggaAGACGcGGUGCGCg-- -3'
miRNA:   3'- cCCGGgCGGC-------UUUGUuUCACGUGauc -5'
6384 5' -52.7 NC_001847.1 + 41533 0.66 0.974344
Target:  5'- -cGCCgGCCGGAgcaccugggcgaugGCAGAGUGCGa--- -3'
miRNA:   3'- ccCGGgCGGCUU--------------UGUUUCACGUgauc -5'
6384 5' -52.7 NC_001847.1 + 115129 0.66 0.972406
Target:  5'- aGGG-CCGCCcu-AUugGAAGUGCGCUGc -3'
miRNA:   3'- -CCCgGGCGGcuuUG--UUUCACGUGAUc -5'
6384 5' -52.7 NC_001847.1 + 89357 0.66 0.972406
Target:  5'- cGG-CCGCCGAcgccGGCGccGUGCGCg-- -3'
miRNA:   3'- cCCgGGCGGCU----UUGUuuCACGUGauc -5'
6384 5' -52.7 NC_001847.1 + 82718 0.66 0.972406
Target:  5'- cGGGCCCGCuuCGAGcucgacagcgcGCGccGcccGCGCUGGa -3'
miRNA:   3'- -CCCGGGCG--GCUU-----------UGUuuCa--CGUGAUC- -5'
6384 5' -52.7 NC_001847.1 + 46071 0.66 0.972406
Target:  5'- cGGGCgaaagagcgCCGCCGAAACccGGcGCGCc-- -3'
miRNA:   3'- -CCCG---------GGCGGCUUUGuuUCaCGUGauc -5'
6384 5' -52.7 NC_001847.1 + 51064 0.66 0.972406
Target:  5'- aGGCCa-CCGAGGCGuucGUGCGCg-- -3'
miRNA:   3'- cCCGGgcGGCUUUGUuu-CACGUGauc -5'
6384 5' -52.7 NC_001847.1 + 34633 0.66 0.972406
Target:  5'- cGGcGCCugcgCGCCGAGGCcGAGcgGCGCgccgAGg -3'
miRNA:   3'- -CC-CGG----GCGGCUUUGuUUCa-CGUGa---UC- -5'
6384 5' -52.7 NC_001847.1 + 71217 0.66 0.972406
Target:  5'- cGGCCgCGCUGGguGAUGGAGUGUGCc-- -3'
miRNA:   3'- cCCGG-GCGGCU--UUGUUUCACGUGauc -5'
6384 5' -52.7 NC_001847.1 + 69095 0.66 0.972406
Target:  5'- cGGCgCCGCCGc--CGAcGUGCGCg-- -3'
miRNA:   3'- cCCG-GGCGGCuuuGUUuCACGUGauc -5'
6384 5' -52.7 NC_001847.1 + 18406 0.66 0.972406
Target:  5'- cGGGCCCGCgGGGcuguCGAAcaGCGCg-- -3'
miRNA:   3'- -CCCGGGCGgCUUu---GUUUcaCGUGauc -5'
6384 5' -52.7 NC_001847.1 + 36202 0.66 0.972406
Target:  5'- uGGGCUCGCUGAAgauAUAAGGcggGUGCUu- -3'
miRNA:   3'- -CCCGGGCGGCUU---UGUUUCa--CGUGAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.