miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6385 3' -52.8 NC_001847.1 + 14130 0.66 0.974935
Target:  5'- aCGGgcGAUGgGcgGGGCccGCGCcugGGCGg -3'
miRNA:   3'- -GCCuuCUACaCuaCUUG--CGCGa--CCGC- -5'
6385 3' -52.8 NC_001847.1 + 88865 0.66 0.974935
Target:  5'- aGGAAGAcGcGGUGcGCGCGgCggcGGCGg -3'
miRNA:   3'- gCCUUCUaCaCUACuUGCGC-Ga--CCGC- -5'
6385 3' -52.8 NC_001847.1 + 12765 0.66 0.974935
Target:  5'- uCGcGcAGAUGUcGcUGGACGCGCUGuGCc -3'
miRNA:   3'- -GC-CuUCUACA-CuACUUGCGCGAC-CGc -5'
6385 3' -52.8 NC_001847.1 + 132059 0.66 0.972192
Target:  5'- cCGGccGcgGccugcgcGccGGACGCGCUGGCGg -3'
miRNA:   3'- -GCCuuCuaCa------CuaCUUGCGCGACCGC- -5'
6385 3' -52.8 NC_001847.1 + 29246 0.66 0.972192
Target:  5'- cCGGccGcgGccugcgcGccGGACGCGCUGGCGg -3'
miRNA:   3'- -GCCuuCuaCa------CuaCUUGCGCGACCGC- -5'
6385 3' -52.8 NC_001847.1 + 37062 0.66 0.972192
Target:  5'- uGGggGcgGcUGGUGcACGCGguaCUGGCc -3'
miRNA:   3'- gCCuuCuaC-ACUACuUGCGC---GACCGc -5'
6385 3' -52.8 NC_001847.1 + 6144 0.66 0.96924
Target:  5'- uCGGggGGcucgGUGGcggUGAcgGCGCGCaGGUGc -3'
miRNA:   3'- -GCCuuCUa---CACU---ACU--UGCGCGaCCGC- -5'
6385 3' -52.8 NC_001847.1 + 66500 0.66 0.96924
Target:  5'- gGGAGGcgGUGAaguuUGGgcuggagcuGCGCGgCUGGgGg -3'
miRNA:   3'- gCCUUCuaCACU----ACU---------UGCGC-GACCgC- -5'
6385 3' -52.8 NC_001847.1 + 95067 0.66 0.96924
Target:  5'- gCGGcAAGggGUGcaauuaGAgGCGCUGGCGu -3'
miRNA:   3'- -GCC-UUCuaCACuac---UUgCGCGACCGC- -5'
6385 3' -52.8 NC_001847.1 + 132326 0.66 0.966071
Target:  5'- cCGGcGGAgGUGcc-GGCGCgGCUGGCGg -3'
miRNA:   3'- -GCCuUCUaCACuacUUGCG-CGACCGC- -5'
6385 3' -52.8 NC_001847.1 + 29513 0.66 0.966071
Target:  5'- cCGGcGGAgGUGcc-GGCGCgGCUGGCGg -3'
miRNA:   3'- -GCCuUCUaCACuacUUGCG-CGACCGC- -5'
6385 3' -52.8 NC_001847.1 + 7392 0.66 0.962678
Target:  5'- uGGAGGAcGUG----GCGCGCUcGGCa -3'
miRNA:   3'- gCCUUCUaCACuacuUGCGCGA-CCGc -5'
6385 3' -52.8 NC_001847.1 + 12732 0.67 0.960533
Target:  5'- uGGAAGAugcacgucucguauaUGcgGAUGAGCGCGCagucgccGGCc -3'
miRNA:   3'- gCCUUCU---------------ACa-CUACUUGCGCGa------CCGc -5'
6385 3' -52.8 NC_001847.1 + 27760 0.67 0.959056
Target:  5'- gCGGggGGcUGUGcgGGGCguacaauaaacuGCGC-GGCGg -3'
miRNA:   3'- -GCCuuCU-ACACuaCUUG------------CGCGaCCGC- -5'
6385 3' -52.8 NC_001847.1 + 30419 0.67 0.959056
Target:  5'- cCGGcAAGcucGUGgcGGGCGCGgaGGCGc -3'
miRNA:   3'- -GCC-UUCua-CACuaCUUGCGCgaCCGC- -5'
6385 3' -52.8 NC_001847.1 + 57978 0.67 0.959056
Target:  5'- uCGGGAGGcagGAccGGCGCGgUGGCGg -3'
miRNA:   3'- -GCCUUCUacaCUacUUGCGCgACCGC- -5'
6385 3' -52.8 NC_001847.1 + 53688 0.67 0.959056
Target:  5'- cCGcAAGAUGUGcgcgcgcGAGCGCGCcgccGGCGg -3'
miRNA:   3'- -GCcUUCUACACua-----CUUGCGCGa---CCGC- -5'
6385 3' -52.8 NC_001847.1 + 113607 0.67 0.9552
Target:  5'- ----cGAUGUGccagcuUGGGCGCGUUGGCc -3'
miRNA:   3'- gccuuCUACACu-----ACUUGCGCGACCGc -5'
6385 3' -52.8 NC_001847.1 + 89979 0.67 0.9552
Target:  5'- gCGGAAGcgGUGcUGcGCGCcGCggGGCu -3'
miRNA:   3'- -GCCUUCuaCACuACuUGCG-CGa-CCGc -5'
6385 3' -52.8 NC_001847.1 + 74127 0.67 0.9552
Target:  5'- cCGG-GGAUGUGAcGcGCgGCGCcgaUGGCGg -3'
miRNA:   3'- -GCCuUCUACACUaCuUG-CGCG---ACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.