miRNA display CGI


Results 1 - 20 of 1076 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6385 5' -66.7 NC_001847.1 + 91306 0.65 0.418698
Target:  5'- gGCuccaGCAGCGCCaGcgcggcaaagaagcGGCCGCCGUCgCCc -3'
miRNA:   3'- aCGc---CGUCGCGGaC--------------CCGGUGGCGG-GG- -5'
6385 5' -66.7 NC_001847.1 + 77819 0.66 0.416215
Target:  5'- cGCGGCGcgugccggccuuuuuGCGCCacuGGCCAgCGCgCUg -3'
miRNA:   3'- aCGCCGU---------------CGCGGac-CCGGUgGCGgGG- -5'
6385 5' -66.7 NC_001847.1 + 60481 0.66 0.412919
Target:  5'- cGCGGCucggccGGCuCCaGGcGCagcaGCUGCCCCg -3'
miRNA:   3'- aCGCCG------UCGcGGaCC-CGg---UGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 38794 0.66 0.412919
Target:  5'- cUGcCGGCAGCGCgUcgcacGCCagcccGCCGCCCa -3'
miRNA:   3'- -AC-GCCGUCGCGgAcc---CGG-----UGGCGGGg -5'
6385 5' -66.7 NC_001847.1 + 101187 0.66 0.412919
Target:  5'- gGCGcCAGCGCgCUcGGGuucuCCAgCGCCUCg -3'
miRNA:   3'- aCGCcGUCGCG-GA-CCC----GGUgGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 98329 0.66 0.412919
Target:  5'- aGuCGGC-GCGCCgGuGGCgCACgaagcggcaaaaCGCCCCa -3'
miRNA:   3'- aC-GCCGuCGCGGaC-CCG-GUG------------GCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 78648 0.66 0.412919
Target:  5'- gGCGGCGcggucgcgcGCGCCUGcGUCGCCGgCg- -3'
miRNA:   3'- aCGCCGU---------CGCGGACcCGGUGGCgGgg -5'
6385 5' -66.7 NC_001847.1 + 22795 0.66 0.412919
Target:  5'- cGCGGaaCAGCucguagaugcggGCCgGcGGCgGCCGCUCCc -3'
miRNA:   3'- aCGCC--GUCG------------CGGaC-CCGgUGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 36701 0.66 0.412919
Target:  5'- aGCGGCgugguggaGGCgGCUUcGGUCGCCGCCg- -3'
miRNA:   3'- aCGCCG--------UCG-CGGAcCCGGUGGCGGgg -5'
6385 5' -66.7 NC_001847.1 + 74153 0.66 0.412919
Target:  5'- gGCGGCcucgacGGCGCCgUGGGCgCGCgcagcggggaCGCCaaCCu -3'
miRNA:   3'- aCGCCG------UCGCGG-ACCCG-GUG----------GCGG--GG- -5'
6385 5' -66.7 NC_001847.1 + 127873 0.66 0.412919
Target:  5'- cUGCGG-AGCGUCUcGcGuGCCcccGCCGCgCCCg -3'
miRNA:   3'- -ACGCCgUCGCGGA-C-C-CGG---UGGCG-GGG- -5'
6385 5' -66.7 NC_001847.1 + 4220 0.66 0.412919
Target:  5'- cGcCGGCcucgguccuGGCcCCgaGGGCacCGCCGCCCCc -3'
miRNA:   3'- aC-GCCG---------UCGcGGa-CCCG--GUGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 107594 0.66 0.412919
Target:  5'- aUGCGGCucccAGcCGCCgc-GCCGCCGUUCUc -3'
miRNA:   3'- -ACGCCG----UC-GCGGaccCGGUGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 106120 0.66 0.412919
Target:  5'- cGCGcGCGGC-UCUGGGCgcgauaGCUGCgCCa -3'
miRNA:   3'- aCGC-CGUCGcGGACCCGg-----UGGCGgGG- -5'
6385 5' -66.7 NC_001847.1 + 103258 0.66 0.412919
Target:  5'- gGCGGCAuccGCGCgacGGGCU-CCGCCg- -3'
miRNA:   3'- aCGCCGU---CGCGga-CCCGGuGGCGGgg -5'
6385 5' -66.7 NC_001847.1 + 81048 0.66 0.412919
Target:  5'- cGCGGCgAGCGCCUcuaGGUUGCCGgCg- -3'
miRNA:   3'- aCGCCG-UCGCGGAc--CCGGUGGCgGgg -5'
6385 5' -66.7 NC_001847.1 + 77096 0.66 0.412919
Target:  5'- cGCGaGCuGCGUCagccGGGUCgccagcagcggGCCGCCCUu -3'
miRNA:   3'- aCGC-CGuCGCGGa---CCCGG-----------UGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 29404 0.66 0.412919
Target:  5'- gGCGGCcGCGCUggcGGcGCgGaCCgugGCCCCg -3'
miRNA:   3'- aCGCCGuCGCGGa--CC-CGgU-GG---CGGGG- -5'
6385 5' -66.7 NC_001847.1 + 13381 0.66 0.412919
Target:  5'- gGCGcGCA-CGUCcGGGCgCGCCGCgggCCCu -3'
miRNA:   3'- aCGC-CGUcGCGGaCCCG-GUGGCG---GGG- -5'
6385 5' -66.7 NC_001847.1 + 80370 0.66 0.412919
Target:  5'- aGCGuGCccaCGCCUGGGaCgACCGUCUg -3'
miRNA:   3'- aCGC-CGuc-GCGGACCC-GgUGGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.