miRNA display CGI


Results 1 - 20 of 1076 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6385 5' -66.7 NC_001847.1 + 73 0.79 0.054009
Target:  5'- cGCGGCGGgcccgggccCGCuCUGGGCU-CCGCCCCu -3'
miRNA:   3'- aCGCCGUC---------GCG-GACCCGGuGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 113 0.67 0.335995
Target:  5'- -cCGGCGccccGCGCCccGGCC-CCGCCCg -3'
miRNA:   3'- acGCCGU----CGCGGacCCGGuGGCGGGg -5'
6385 5' -66.7 NC_001847.1 + 167 0.72 0.169787
Target:  5'- cGgGGUucuGCGUCUuggcccccgGGGCCcCCGCCCCc -3'
miRNA:   3'- aCgCCGu--CGCGGA---------CCCGGuGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 222 0.68 0.308293
Target:  5'- -cCGGgGGCccgaGCCcGGGCCuCgCGCCCCg -3'
miRNA:   3'- acGCCgUCG----CGGaCCCGGuG-GCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 266 0.68 0.288683
Target:  5'- aGgGGCccgAGC-CCggGGGCCGCCGagCCCg -3'
miRNA:   3'- aCgCCG---UCGcGGa-CCCGGUGGCg-GGG- -5'
6385 5' -66.7 NC_001847.1 + 355 0.69 0.270067
Target:  5'- --gGGCuucGCGCCccGGGgC-CCGCCCCg -3'
miRNA:   3'- acgCCGu--CGCGGa-CCCgGuGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 486 0.78 0.062941
Target:  5'- aGCGGCGGCGgCgGGGCgGCCGCgCgCCa -3'
miRNA:   3'- aCGCCGUCGCgGaCCCGgUGGCG-G-GG- -5'
6385 5' -66.7 NC_001847.1 + 495 0.68 0.301645
Target:  5'- cGCGcCuccGCGCCUGcuGCCGgcCCGCCCCc -3'
miRNA:   3'- aCGCcGu--CGCGGACc-CGGU--GGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 576 0.67 0.321229
Target:  5'- cGCGucucCGGCGCC-GGGUCcuggcccuccgcgGCCGCUCCg -3'
miRNA:   3'- aCGCc---GUCGCGGaCCCGG-------------UGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 626 0.7 0.235753
Target:  5'- cGCGGCccGCGCCUcc-CC-CCGCCCCc -3'
miRNA:   3'- aCGCCGu-CGCGGAcccGGuGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 732 0.69 0.246766
Target:  5'- cGCGGUGGUGCCguuuacGGCUACgaGCCCa -3'
miRNA:   3'- aCGCCGUCGCGGac----CCGGUGg-CGGGg -5'
6385 5' -66.7 NC_001847.1 + 881 0.8 0.040101
Target:  5'- gGCGGCGgcccGCGCCgGGGCCGCCGCggccgccggccgccgCCCg -3'
miRNA:   3'- aCGCCGU----CGCGGaCCCGGUGGCG---------------GGG- -5'
6385 5' -66.7 NC_001847.1 + 967 0.66 0.38872
Target:  5'- cGcCGGCAcccGgGCCggcgGGGCUuCCGCCgCg -3'
miRNA:   3'- aC-GCCGU---CgCGGa---CCCGGuGGCGGgG- -5'
6385 5' -66.7 NC_001847.1 + 1003 0.79 0.050017
Target:  5'- gGCGGCAcGCGCUccaccaGGCCGCCGCCCg -3'
miRNA:   3'- aCGCCGU-CGCGGac----CCGGUGGCGGGg -5'
6385 5' -66.7 NC_001847.1 + 1063 0.81 0.033131
Target:  5'- aGCGGCGGCGCC-GGGCUguucGCUGCUCCc -3'
miRNA:   3'- aCGCCGUCGCGGaCCCGG----UGGCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 1107 0.7 0.220009
Target:  5'- cGCgGGCGGCGCC---GCCGCgGCCuCCa -3'
miRNA:   3'- aCG-CCGUCGCGGaccCGGUGgCGG-GG- -5'
6385 5' -66.7 NC_001847.1 + 1138 0.82 0.028365
Target:  5'- aGCGGCGGCGCCUcGGCgCGCgGCUCCg -3'
miRNA:   3'- aCGCCGUCGCGGAcCCG-GUGgCGGGG- -5'
6385 5' -66.7 NC_001847.1 + 1170 0.77 0.071459
Target:  5'- cGCGGCcGCGCagaaGGCCACCGCCgCg -3'
miRNA:   3'- aCGCCGuCGCGgac-CCGGUGGCGGgG- -5'
6385 5' -66.7 NC_001847.1 + 1287 0.69 0.270067
Target:  5'- gGCGGCgcGGUGgCU-GGCCGCCucGCCCUc -3'
miRNA:   3'- aCGCCG--UCGCgGAcCCGGUGG--CGGGG- -5'
6385 5' -66.7 NC_001847.1 + 1492 0.77 0.064562
Target:  5'- aGCGGCGGCGCCUcgGGGUagaGCCGCgCg -3'
miRNA:   3'- aCGCCGUCGCGGA--CCCGg--UGGCGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.