miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6386 3' -55.9 NC_001847.1 + 131414 0.66 0.899633
Target:  5'- ---cGGCCGCGUGCgcgccgUGGCcGGCgCGc -3'
miRNA:   3'- ucuuCCGGUGCAUGa-----ACCGcUCG-GCu -5'
6386 3' -55.9 NC_001847.1 + 57762 0.66 0.899633
Target:  5'- cGcuGGCCACGggGCUgcUGGUGcucGCCGGg -3'
miRNA:   3'- uCuuCCGGUGCa-UGA--ACCGCu--CGGCU- -5'
6386 3' -55.9 NC_001847.1 + 120891 0.66 0.899633
Target:  5'- -cAAGGCCGCG-ACgaGaGCGGGCuCGGc -3'
miRNA:   3'- ucUUCCGGUGCaUGaaC-CGCUCG-GCU- -5'
6386 3' -55.9 NC_001847.1 + 34451 0.66 0.899633
Target:  5'- cGGAcgAGGCCGCGg---UGGCc-GCCGGc -3'
miRNA:   3'- -UCU--UCCGGUGCaugaACCGcuCGGCU- -5'
6386 3' -55.9 NC_001847.1 + 34071 0.66 0.899633
Target:  5'- cGAGGGgCACGcggaGCgcgUGGCG-GCCGc -3'
miRNA:   3'- uCUUCCgGUGCa---UGa--ACCGCuCGGCu -5'
6386 3' -55.9 NC_001847.1 + 99206 0.66 0.899633
Target:  5'- gAGgcGGCCGCGcgGC--GGCGcGCCGc -3'
miRNA:   3'- -UCuuCCGGUGCa-UGaaCCGCuCGGCu -5'
6386 3' -55.9 NC_001847.1 + 21638 0.66 0.893021
Target:  5'- cGcGGGCCGCGcccggGCgcgaccggagGGCGAGCCc- -3'
miRNA:   3'- uCuUCCGGUGCa----UGaa--------CCGCUCGGcu -5'
6386 3' -55.9 NC_001847.1 + 59261 0.66 0.893021
Target:  5'- -cAGGGCCAUG-AUUUGGCucucGAGCCc- -3'
miRNA:   3'- ucUUCCGGUGCaUGAACCG----CUCGGcu -5'
6386 3' -55.9 NC_001847.1 + 124451 0.66 0.893021
Target:  5'- cGcGGGCCGCGcccggGCgcgaccggagGGCGAGCCc- -3'
miRNA:   3'- uCuUCCGGUGCa----UGaa--------CCGCUCGGcu -5'
6386 3' -55.9 NC_001847.1 + 99971 0.66 0.893021
Target:  5'- cGAAGGCCGCGUGCccccGGCGGn---- -3'
miRNA:   3'- uCUUCCGGUGCAUGaa--CCGCUcggcu -5'
6386 3' -55.9 NC_001847.1 + 73234 0.66 0.893021
Target:  5'- aGGggGGCgGCG-GCgcgGGCGcGCuCGAg -3'
miRNA:   3'- -UCuuCCGgUGCaUGaa-CCGCuCG-GCU- -5'
6386 3' -55.9 NC_001847.1 + 53857 0.66 0.893021
Target:  5'- cGggGGUCAggggGUGCUguggGGCG-GCCGu -3'
miRNA:   3'- uCuuCCGGUg---CAUGAa---CCGCuCGGCu -5'
6386 3' -55.9 NC_001847.1 + 102972 0.66 0.886176
Target:  5'- cGGggGGCCgggguucuGCGU-CUUGGCccccgGGGCCc- -3'
miRNA:   3'- -UCuuCCGG--------UGCAuGAACCG-----CUCGGcu -5'
6386 3' -55.9 NC_001847.1 + 18635 0.66 0.886176
Target:  5'- cGcAGGCagAgGUGCUcGGCGAGCgCGAc -3'
miRNA:   3'- uCuUCCGg-UgCAUGAaCCGCUCG-GCU- -5'
6386 3' -55.9 NC_001847.1 + 102558 0.66 0.886176
Target:  5'- cGgcGGCCGCGacuaggcgcaGCUUGGCGuccGCCa- -3'
miRNA:   3'- uCuuCCGGUGCa---------UGAACCGCu--CGGcu -5'
6386 3' -55.9 NC_001847.1 + 100858 0.66 0.886176
Target:  5'- uGAcGGCCGCGaGCgcGGCGcccAGCCGc -3'
miRNA:   3'- uCUuCCGGUGCaUGaaCCGC---UCGGCu -5'
6386 3' -55.9 NC_001847.1 + 1105 0.66 0.886176
Target:  5'- uGGAGacGCCGCGUGCcccugcgacgcUGGCGAGaCCGc -3'
miRNA:   3'- uCUUC--CGGUGCAUGa----------ACCGCUC-GGCu -5'
6386 3' -55.9 NC_001847.1 + 42731 0.66 0.886176
Target:  5'- cGGgcGGCCGCGcggGC--GGCGGGgCGGa -3'
miRNA:   3'- -UCuuCCGGUGCa--UGaaCCGCUCgGCU- -5'
6386 3' -55.9 NC_001847.1 + 159 0.66 0.886176
Target:  5'- cGGggGGCCgggguucuGCGU-CUUGGCccccgGGGCCc- -3'
miRNA:   3'- -UCuuCCGG--------UGCAuGAACCG-----CUCGGcu -5'
6386 3' -55.9 NC_001847.1 + 81074 0.66 0.884077
Target:  5'- cGAAGGCgGCGacgGCgcUGGCGGcggccucgccgcgcGCCGAc -3'
miRNA:   3'- uCUUCCGgUGCa--UGa-ACCGCU--------------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.