miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6386 5' -56.4 NC_001847.1 + 114134 0.66 0.904628
Target:  5'- gGGUCGCCCgcaCAGccGCGc-GCGGUGc -3'
miRNA:   3'- -CCAGCGGGag-GUCcaUGCaaUGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 79662 0.66 0.904628
Target:  5'- cGUCGCCCauagCAGGgcaGCGgcuagcGCGGCGc -3'
miRNA:   3'- cCAGCGGGag--GUCCa--UGCaa----UGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 76375 0.66 0.904628
Target:  5'- cGGUCGCcucuucacggCCUCgGGGgggGCGccgggggccGCGGCGg -3'
miRNA:   3'- -CCAGCG----------GGAGgUCCa--UGCaa-------UGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 3059 0.66 0.898973
Target:  5'- --aCGCgCUCCGGGUGCGccgccagcgcgucCGGCGc -3'
miRNA:   3'- ccaGCGgGAGGUCCAUGCaau----------GCCGC- -5'
6386 5' -56.4 NC_001847.1 + 105872 0.66 0.898973
Target:  5'- --aCGCgCUCCGGGUGCGccgccagcgcgucCGGCGc -3'
miRNA:   3'- ccaGCGgGAGGUCCAUGCaau----------GCCGC- -5'
6386 5' -56.4 NC_001847.1 + 82699 0.66 0.898333
Target:  5'- gGGcCGCCCagucgUCCAGGUccAUGUgcuccACGcGCGg -3'
miRNA:   3'- -CCaGCGGG-----AGGUCCA--UGCAa----UGC-CGC- -5'
6386 5' -56.4 NC_001847.1 + 63137 0.66 0.898333
Target:  5'- cGGUUGUgCaCCAGGUcgggcccgACGUUGCGGa- -3'
miRNA:   3'- -CCAGCGgGaGGUCCA--------UGCAAUGCCgc -5'
6386 5' -56.4 NC_001847.1 + 3867 0.66 0.898333
Target:  5'- ---gGCCCUCCAGcGgcgGCGgcccgucgcGCGGCGc -3'
miRNA:   3'- ccagCGGGAGGUC-Ca--UGCaa-------UGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 106680 0.66 0.898333
Target:  5'- ---gGCCCUCCAGcGgcgGCGgcccgucgcGCGGCGc -3'
miRNA:   3'- ccagCGGGAGGUC-Ca--UGCaa-------UGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 132525 0.66 0.8964
Target:  5'- cGGUCccgccgaaGCaCCUCCGGcgcggcgggcucgcGUGCGgccGCGGCGg -3'
miRNA:   3'- -CCAG--------CG-GGAGGUC--------------CAUGCaa-UGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 104894 0.66 0.891811
Target:  5'- cGGcgagCGCCC-CgCGGGgcccGCGcgGCGGCGg -3'
miRNA:   3'- -CCa---GCGGGaG-GUCCa---UGCaaUGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 26522 0.66 0.891811
Target:  5'- cGUCGCCCgccgucccCCGGaGcACGUUuuCGGCGc -3'
miRNA:   3'- cCAGCGGGa-------GGUC-CaUGCAAu-GCCGC- -5'
6386 5' -56.4 NC_001847.1 + 29494 0.66 0.891811
Target:  5'- --aCGCUCUCCGGccGCGg-GCGGCGc -3'
miRNA:   3'- ccaGCGGGAGGUCcaUGCaaUGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 2081 0.66 0.891811
Target:  5'- cGGcgagCGCCC-CgCGGGgcccGCGcgGCGGCGg -3'
miRNA:   3'- -CCa---GCGGGaG-GUCCa---UGCaaUGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 70220 0.66 0.891811
Target:  5'- --cCGCCCcgCCGGcGUugGUgugACGcGCGg -3'
miRNA:   3'- ccaGCGGGa-GGUC-CAugCAa--UGC-CGC- -5'
6386 5' -56.4 NC_001847.1 + 91343 0.66 0.891811
Target:  5'- cGUCGCCCUCgAccGGcGCGc--CGGCGc -3'
miRNA:   3'- cCAGCGGGAGgU--CCaUGCaauGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 83706 0.66 0.891811
Target:  5'- uGUCGCCgUCCAuGUcgcGCGcggGCGGCu -3'
miRNA:   3'- cCAGCGGgAGGUcCA---UGCaa-UGCCGc -5'
6386 5' -56.4 NC_001847.1 + 91659 0.66 0.891811
Target:  5'- -uUCGCCCUCUcucgcGGcUGCGgcUGCGGCu -3'
miRNA:   3'- ccAGCGGGAGGu----CC-AUGCa-AUGCCGc -5'
6386 5' -56.4 NC_001847.1 + 549 0.66 0.887791
Target:  5'- --gCGCUCUCCGGGggcACGauugaccugccugGCGGCGa -3'
miRNA:   3'- ccaGCGGGAGGUCCa--UGCaa-----------UGCCGC- -5'
6386 5' -56.4 NC_001847.1 + 31817 0.66 0.885066
Target:  5'- -cUUGCCCUCCgcggacagggGGGUugGcgcGCGGCc -3'
miRNA:   3'- ccAGCGGGAGG----------UCCAugCaa-UGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.