miRNA display CGI


Results 1 - 20 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 3' -58.1 NC_001847.1 + 59502 0.66 0.814762
Target:  5'- cCCGCGCCuccgGCUcCGGCAUC-GcCGUCg -3'
miRNA:   3'- cGGCGUGGca--CGA-GUCGUAGaC-GCGG- -5'
6387 3' -58.1 NC_001847.1 + 62381 0.66 0.814762
Target:  5'- cGCCGCGCCGccCgacGCGUCUuuaGCGCa -3'
miRNA:   3'- -CGGCGUGGCacGaguCGUAGA---CGCGg -5'
6387 3' -58.1 NC_001847.1 + 39843 0.66 0.814762
Target:  5'- cGCCGCGCCuGgagGCgccagCGGCcgCaagcuugccgGCGCCc -3'
miRNA:   3'- -CGGCGUGG-Ca--CGa----GUCGuaGa---------CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 42763 0.66 0.814762
Target:  5'- gGCCGacuaCGCCaUGCUCuGCGcuaaaagccUCgcgGCGCCg -3'
miRNA:   3'- -CGGC----GUGGcACGAGuCGU---------AGa--CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2180 0.66 0.814762
Target:  5'- cCCGCGCCGccUGggCGGCGUgCggGCGCa -3'
miRNA:   3'- cGGCGUGGC--ACgaGUCGUA-Ga-CGCGg -5'
6387 3' -58.1 NC_001847.1 + 17410 0.66 0.814762
Target:  5'- cUUGCGCUGUGaCUUGGUgcccauGUCgcgGCGCCa -3'
miRNA:   3'- cGGCGUGGCAC-GAGUCG------UAGa--CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 30150 0.66 0.814762
Target:  5'- cGgCGCGCCGUGCgcccuggguGCGUg-GCGCUc -3'
miRNA:   3'- -CgGCGUGGCACGagu------CGUAgaCGCGG- -5'
6387 3' -58.1 NC_001847.1 + 1364 0.66 0.814762
Target:  5'- cCCGUugCGUGC---GCGUgUGuCGCCg -3'
miRNA:   3'- cGGCGugGCACGaguCGUAgAC-GCGG- -5'
6387 3' -58.1 NC_001847.1 + 36345 0.66 0.814762
Target:  5'- uGCCGCgcGCCGcgGCgCGcGCAcgCgGCGCCg -3'
miRNA:   3'- -CGGCG--UGGCa-CGaGU-CGUa-GaCGCGG- -5'
6387 3' -58.1 NC_001847.1 + 59632 0.66 0.814762
Target:  5'- cGCCGCccgcgACCGcGCUCuuuugAGCccgCUcGCGCCc -3'
miRNA:   3'- -CGGCG-----UGGCaCGAG-----UCGua-GA-CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 74285 0.66 0.814762
Target:  5'- cGCuCGCGCUG-GcCUCGGCGg--GCGCg -3'
miRNA:   3'- -CG-GCGUGGCaC-GAGUCGUagaCGCGg -5'
6387 3' -58.1 NC_001847.1 + 37382 0.66 0.814762
Target:  5'- uGCUgGCgGCCGgcgGCUggcaAGUAUCUGcCGCCg -3'
miRNA:   3'- -CGG-CG-UGGCa--CGAg---UCGUAGAC-GCGG- -5'
6387 3' -58.1 NC_001847.1 + 127053 0.66 0.814762
Target:  5'- cGCCGCgucGCCGaucucGCcgCGGCGgugccccccUCUGCGCg -3'
miRNA:   3'- -CGGCG---UGGCa----CGa-GUCGU---------AGACGCGg -5'
6387 3' -58.1 NC_001847.1 + 87606 0.66 0.814762
Target:  5'- cGCC-CGCCGUGCUggaguuugaCAGCGaguucgagCUGCuGCUg -3'
miRNA:   3'- -CGGcGUGGCACGA---------GUCGUa-------GACG-CGG- -5'
6387 3' -58.1 NC_001847.1 + 75748 0.66 0.814762
Target:  5'- cGCCGCGCCuccgccgGCUCcGUAUUuuuUGCcgGCCg -3'
miRNA:   3'- -CGGCGUGGca-----CGAGuCGUAG---ACG--CGG- -5'
6387 3' -58.1 NC_001847.1 + 59363 0.66 0.814762
Target:  5'- cGCCGCGCCGaGCccgCGGCcgUguucacccGCGCg -3'
miRNA:   3'- -CGGCGUGGCaCGa--GUCGuaGa-------CGCGg -5'
6387 3' -58.1 NC_001847.1 + 122686 0.66 0.814762
Target:  5'- aGCCGCGgaG-GCUCcgccGCGcgcgCUGUGCCg -3'
miRNA:   3'- -CGGCGUggCaCGAGu---CGUa---GACGCGG- -5'
6387 3' -58.1 NC_001847.1 + 97572 0.66 0.814762
Target:  5'- aGCCGCAgCG-GC-CAGCGccgCcGCGUCu -3'
miRNA:   3'- -CGGCGUgGCaCGaGUCGUa--GaCGCGG- -5'
6387 3' -58.1 NC_001847.1 + 45786 0.66 0.814762
Target:  5'- -gCGCACgGcGC-CGGCGUCgGCgGCCg -3'
miRNA:   3'- cgGCGUGgCaCGaGUCGUAGaCG-CGG- -5'
6387 3' -58.1 NC_001847.1 + 11530 0.66 0.814762
Target:  5'- aGCCGCcggguGCUGcGUUC-GCGUCuggagUGCGCCc -3'
miRNA:   3'- -CGGCG-----UGGCaCGAGuCGUAG-----ACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.