miRNA display CGI


Results 1 - 20 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 3' -58.1 NC_001847.1 + 8 0.7 0.569935
Target:  5'- cGCCGCGCCGcGCg-GGCcccCUGCGaCCc -3'
miRNA:   3'- -CGGCGUGGCaCGagUCGua-GACGC-GG- -5'
6387 3' -58.1 NC_001847.1 + 889 0.66 0.806033
Target:  5'- cCCGCGCCGggGCcgccgCGGCcgCcgGcCGCCg -3'
miRNA:   3'- cGGCGUGGCa-CGa----GUCGuaGa-C-GCGG- -5'
6387 3' -58.1 NC_001847.1 + 951 0.71 0.52036
Target:  5'- cGCgCGCGCCGcuccacgcUGCgccgGGCGUCUauGCGCCg -3'
miRNA:   3'- -CG-GCGUGGC--------ACGag--UCGUAGA--CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 1191 0.69 0.610407
Target:  5'- cGCCGCgGCCGg---CAGCucGUCggGCGCCa -3'
miRNA:   3'- -CGGCG-UGGCacgaGUCG--UAGa-CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 1231 0.67 0.744909
Target:  5'- cGCCGCccgcaggccagguacACCG-GCcgCAGCGgc-GCGCCg -3'
miRNA:   3'- -CGGCG---------------UGGCaCGa-GUCGUagaCGCGG- -5'
6387 3' -58.1 NC_001847.1 + 1344 0.75 0.293819
Target:  5'- cGCCGCGCCcUGCgCGGCcauGUCcuUGCGCCc -3'
miRNA:   3'- -CGGCGUGGcACGaGUCG---UAG--ACGCGG- -5'
6387 3' -58.1 NC_001847.1 + 1364 0.66 0.814762
Target:  5'- cCCGUugCGUGC---GCGUgUGuCGCCg -3'
miRNA:   3'- cGGCGugGCACGaguCGUAgAC-GCGG- -5'
6387 3' -58.1 NC_001847.1 + 1561 0.66 0.769641
Target:  5'- -aCGCGCCGcgagGC-CAGCAcggCgcGCGCCa -3'
miRNA:   3'- cgGCGUGGCa---CGaGUCGUa--Ga-CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 1595 0.68 0.671436
Target:  5'- cGCCGC-UCGggccaGCgcgCGGCGcaCUGCGCCg -3'
miRNA:   3'- -CGGCGuGGCa----CGa--GUCGUa-GACGCGG- -5'
6387 3' -58.1 NC_001847.1 + 1729 0.74 0.352183
Target:  5'- cGCCGCGCCGcgGC-CAGCcgC-GCGCa -3'
miRNA:   3'- -CGGCGUGGCa-CGaGUCGuaGaCGCGg -5'
6387 3' -58.1 NC_001847.1 + 2180 0.66 0.814762
Target:  5'- cCCGCGCCGccUGggCGGCGUgCggGCGCa -3'
miRNA:   3'- cGGCGUGGC--ACgaGUCGUA-Ga-CGCGg -5'
6387 3' -58.1 NC_001847.1 + 2193 0.67 0.711595
Target:  5'- aGCCGCGCCGcgaccucgggGCggCAGUAggcCgccaGCGCCg -3'
miRNA:   3'- -CGGCGUGGCa---------CGa-GUCGUa--Ga---CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2352 0.73 0.418302
Target:  5'- cGCCGCGCCGgcccgGCcgcgUCGGCGgcggcggcuuuUCgccgGCGCCu -3'
miRNA:   3'- -CGGCGUGGCa----CG----AGUCGU-----------AGa---CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2383 0.66 0.81129
Target:  5'- cCCGCGaagacggcggugaCGcGCUCGGCcguggcucgCUGCGCCg -3'
miRNA:   3'- cGGCGUg------------GCaCGAGUCGua-------GACGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2449 0.68 0.661296
Target:  5'- aGCCGCAgCGaGCUCccgaucgagcgGGCGgcgGCGCCc -3'
miRNA:   3'- -CGGCGUgGCaCGAG-----------UCGUagaCGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2537 0.66 0.768703
Target:  5'- gGCCGCgggACCGcUGCUCuccggcgGGCuGUCUucggcgcggGCGCCu -3'
miRNA:   3'- -CGGCG---UGGC-ACGAG-------UCG-UAGA---------CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2614 0.72 0.44497
Target:  5'- cGCCGCGCCGgaggUGCuUCGGCGggacCGCCg -3'
miRNA:   3'- -CGGCGUGGC----ACG-AGUCGUagacGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2820 0.69 0.640953
Target:  5'- aGCCGCGCCGgcaccuccGC-CGGCGggCUgaacagcgcgcGCGCCa -3'
miRNA:   3'- -CGGCGUGGCa-------CGaGUCGUa-GA-----------CGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2888 0.67 0.721489
Target:  5'- cGCCGCGCCGcGCgUCgaguaccgcgcgAGCGgggccacggUCcGCGCCg -3'
miRNA:   3'- -CGGCGUGGCaCG-AG------------UCGU---------AGaCGCGG- -5'
6387 3' -58.1 NC_001847.1 + 2945 0.66 0.805152
Target:  5'- gGCCGCcuccagcgcggcgGCCGc-CUCGGCGcgCaGCGCCg -3'
miRNA:   3'- -CGGCG-------------UGGCacGAGUCGUa-GaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.