miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 37324 0.66 0.832124
Target:  5'- gCGcGCCGaGCAcAGCGcuGGCGUgcGGUCAu -3'
miRNA:   3'- -GCuCGGC-CGUuUCGC--UCGCA--CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 3287 0.66 0.832124
Target:  5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3'
miRNA:   3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5'
6387 5' -57.2 NC_001847.1 + 106100 0.66 0.832124
Target:  5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3'
miRNA:   3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5'
6387 5' -57.2 NC_001847.1 + 16847 0.66 0.823601
Target:  5'- uCGGGgCGGCGcucgAGGCGAGCG-GGcUCc- -3'
miRNA:   3'- -GCUCgGCCGU----UUCGCUCGCaCC-AGuu -5'
6387 5' -57.2 NC_001847.1 + 26749 0.66 0.822739
Target:  5'- uGGGCCGuaGAGcGCGGGUGcgcggccUGGUCAGu -3'
miRNA:   3'- gCUCGGCcgUUU-CGCUCGC-------ACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 115772 0.66 0.8149
Target:  5'- gGAGCCGGCucGGCcaGAGCGU--UCGc -3'
miRNA:   3'- gCUCGGCCGuuUCG--CUCGCAccAGUu -5'
6387 5' -57.2 NC_001847.1 + 125287 0.66 0.8149
Target:  5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3'
miRNA:   3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5'
6387 5' -57.2 NC_001847.1 + 37478 0.66 0.8149
Target:  5'- cCGGGcCCGGCcuGGC-AGCGgcgGGUCu- -3'
miRNA:   3'- -GCUC-GGCCGuuUCGcUCGCa--CCAGuu -5'
6387 5' -57.2 NC_001847.1 + 22474 0.66 0.8149
Target:  5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3'
miRNA:   3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5'
6387 5' -57.2 NC_001847.1 + 63438 0.66 0.809597
Target:  5'- gCGGGCCGGCGcaccGcgcagacgcggacgcGGCGGGCcUGGUUg- -3'
miRNA:   3'- -GCUCGGCCGU----U---------------UCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 125211 0.66 0.796997
Target:  5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3'
miRNA:   3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5'
6387 5' -57.2 NC_001847.1 + 52126 0.66 0.796997
Target:  5'- gCGGGCCGGCGGcgccccAGCGgaccgacgaGGCcGUGGcCAGg -3'
miRNA:   3'- -GCUCGGCCGUU------UCGC---------UCG-CACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 22398 0.66 0.796997
Target:  5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3'
miRNA:   3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5'
6387 5' -57.2 NC_001847.1 + 78872 0.66 0.787813
Target:  5'- -cAGCUGGCGccGGGCGuGUgGUGGUCGu -3'
miRNA:   3'- gcUCGGCCGU--UUCGCuCG-CACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 43439 0.66 0.787813
Target:  5'- -uGGCCGGCGucGCGAcccggggcgacgGCGcGGUCGc -3'
miRNA:   3'- gcUCGGCCGUuuCGCU------------CGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 24756 0.67 0.778485
Target:  5'- -cAGCCGGCugagguGCGAcGCGcGGUCGu -3'
miRNA:   3'- gcUCGGCCGuuu---CGCU-CGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 125445 0.67 0.778485
Target:  5'- gCGuGGCUGGCcgGAGGaCGGGCG-GGUCGg -3'
miRNA:   3'- -GC-UCGGCCG--UUUC-GCUCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 116682 0.67 0.778485
Target:  5'- uGGGuCCGGCGcuGCGGGCGcGG-CAc -3'
miRNA:   3'- gCUC-GGCCGUuuCGCUCGCaCCaGUu -5'
6387 5' -57.2 NC_001847.1 + 56893 0.67 0.769023
Target:  5'- --cGCCGGCGAcggcgacgccGGCGGGCG-GGUg-- -3'
miRNA:   3'- gcuCGGCCGUU----------UCGCUCGCaCCAguu -5'
6387 5' -57.2 NC_001847.1 + 109231 0.67 0.76807
Target:  5'- gCGGGUCGGCGggcgaaagacaaaAAGCcAGCG-GGUCGg -3'
miRNA:   3'- -GCUCGGCCGU-------------UUCGcUCGCaCCAGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.