miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 37324 0.66 0.832124
Target:  5'- gCGcGCCGaGCAcAGCGcuGGCGUgcGGUCAu -3'
miRNA:   3'- -GCuCGGC-CGUuUCGC--UCGCA--CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 63438 0.66 0.809597
Target:  5'- gCGGGCCGGCGcaccGcgcagacgcggacgcGGCGGGCcUGGUUg- -3'
miRNA:   3'- -GCUCGGCCGU----U---------------UCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 115772 0.66 0.8149
Target:  5'- gGAGCCGGCucGGCcaGAGCGU--UCGc -3'
miRNA:   3'- gCUCGGCCGuuUCG--CUCGCAccAGUu -5'
6387 5' -57.2 NC_001847.1 + 125211 0.66 0.796997
Target:  5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3'
miRNA:   3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5'
6387 5' -57.2 NC_001847.1 + 125287 0.66 0.8149
Target:  5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3'
miRNA:   3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5'
6387 5' -57.2 NC_001847.1 + 43439 0.66 0.787813
Target:  5'- -uGGCCGGCGucGCGAcccggggcgacgGCGcGGUCGc -3'
miRNA:   3'- gcUCGGCCGUuuCGCU------------CGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 106100 0.66 0.832124
Target:  5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3'
miRNA:   3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5'
6387 5' -57.2 NC_001847.1 + 78872 0.66 0.787813
Target:  5'- -cAGCUGGCGccGGGCGuGUgGUGGUCGu -3'
miRNA:   3'- gcUCGGCCGU--UUCGCuCG-CACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 26749 0.66 0.822739
Target:  5'- uGGGCCGuaGAGcGCGGGUGcgcggccUGGUCAGu -3'
miRNA:   3'- gCUCGGCcgUUU-CGCUCGC-------ACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 52126 0.66 0.796997
Target:  5'- gCGGGCCGGCGGcgccccAGCGgaccgacgaGGCcGUGGcCAGg -3'
miRNA:   3'- -GCUCGGCCGUU------UCGC---------UCG-CACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 22398 0.66 0.796997
Target:  5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3'
miRNA:   3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5'
6387 5' -57.2 NC_001847.1 + 3287 0.66 0.832124
Target:  5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3'
miRNA:   3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5'
6387 5' -57.2 NC_001847.1 + 16847 0.66 0.823601
Target:  5'- uCGGGgCGGCGcucgAGGCGAGCG-GGcUCc- -3'
miRNA:   3'- -GCUCgGCCGU----UUCGCUCGCaCC-AGuu -5'
6387 5' -57.2 NC_001847.1 + 37478 0.66 0.8149
Target:  5'- cCGGGcCCGGCcuGGC-AGCGgcgGGUCu- -3'
miRNA:   3'- -GCUC-GGCCGuuUCGcUCGCa--CCAGuu -5'
6387 5' -57.2 NC_001847.1 + 22474 0.66 0.8149
Target:  5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3'
miRNA:   3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5'
6387 5' -57.2 NC_001847.1 + 32647 0.67 0.739926
Target:  5'- aCGAGCUGG-AGGGCGAG-GUGGaCGg -3'
miRNA:   3'- -GCUCGGCCgUUUCGCUCgCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 44811 0.67 0.753628
Target:  5'- cCGAGCgCGGCAccGCGccccagucggcaaugGGCGcGGUCGc -3'
miRNA:   3'- -GCUCG-GCCGUuuCGC---------------UCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 33114 0.67 0.759436
Target:  5'- uGGGCCGGgGGccccguaccugcGGCGGGUGguggagugGGUCGAg -3'
miRNA:   3'- gCUCGGCCgUU------------UCGCUCGCa-------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 75491 0.67 0.759436
Target:  5'- aCGGGCgGGC---GCGAGCG-GGcUCAAa -3'
miRNA:   3'- -GCUCGgCCGuuuCGCUCGCaCC-AGUU- -5'
6387 5' -57.2 NC_001847.1 + 82305 0.67 0.759436
Target:  5'- cCGGGgCGGgAGAauGCGGGCGgGGUCGc -3'
miRNA:   3'- -GCUCgGCCgUUU--CGCUCGCaCCAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.