miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 99747 1.06 0.00253
Target:  5'- cCGAGCCGGCAAAGCGAGCGUGGUCAAa -3'
miRNA:   3'- -GCUCGGCCGUUUCGCUCGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 124236 0.82 0.11586
Target:  5'- uCGGGCCGGCcGAGCGAGCG-GGcCAAa -3'
miRNA:   3'- -GCUCGGCCGuUUCGCUCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 21423 0.82 0.11586
Target:  5'- uCGGGCCGGCcGAGCGAGCG-GGcCAAa -3'
miRNA:   3'- -GCUCGGCCGuUUCGCUCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 125798 0.76 0.280228
Target:  5'- gCGAGUCGGCGGgccGGCGGGCGUgcagcucaaagcgGGUCGGg -3'
miRNA:   3'- -GCUCGGCCGUU---UCGCUCGCA-------------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 101090 0.76 0.294494
Target:  5'- cCGGGUCGGCGGGGCGGGCG-GG-CGc -3'
miRNA:   3'- -GCUCGGCCGUUUCGCUCGCaCCaGUu -5'
6387 5' -57.2 NC_001847.1 + 125518 0.74 0.370117
Target:  5'- gCGGGCCGGCGcggcGGCGGGCGcagcuacGGUCGu -3'
miRNA:   3'- -GCUCGGCCGUu---UCGCUCGCa------CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 31736 0.74 0.386751
Target:  5'- aCGAGCCcuauGUcGAGCGGcGCGUGGUCAGc -3'
miRNA:   3'- -GCUCGGc---CGuUUCGCU-CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 19895 0.73 0.40387
Target:  5'- ---aCCGGCGGAGUGggucAGCGUGGUCGAc -3'
miRNA:   3'- gcucGGCCGUUUCGC----UCGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 15420 0.73 0.430427
Target:  5'- gGAGCgCGGCAcGGCGAGC-UGGUUu- -3'
miRNA:   3'- gCUCG-GCCGUuUCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 71446 0.73 0.439504
Target:  5'- aCGGGCgCGGCuuuGAGCuGAGCGUGGa--- -3'
miRNA:   3'- -GCUCG-GCCGu--UUCG-CUCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 120932 0.72 0.457981
Target:  5'- gGGGCgGGCGc-GCGGGCGUGGUg-- -3'
miRNA:   3'- gCUCGgCCGUuuCGCUCGCACCAguu -5'
6387 5' -57.2 NC_001847.1 + 59400 0.72 0.476865
Target:  5'- gGAGCCGGCGGAG-GcGCGgcGGUCAu -3'
miRNA:   3'- gCUCGGCCGUUUCgCuCGCa-CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 59928 0.72 0.493214
Target:  5'- aGAGCCGGCGgaagggcgccacgcAAGCGuccGGCGUGG-CGu -3'
miRNA:   3'- gCUCGGCCGU--------------UUCGC---UCGCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 13984 0.71 0.525652
Target:  5'- -uGGCCGGC-AAGCG-GCG-GGUCAu -3'
miRNA:   3'- gcUCGGCCGuUUCGCuCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 75650 0.71 0.549739
Target:  5'- gGAGCCGGaggcGCGGGCGUugcucgugaaggccgGGUCGAu -3'
miRNA:   3'- gCUCGGCCguuuCGCUCGCA---------------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 81592 0.7 0.564967
Target:  5'- gCGAGCgCGGCGucgguugAGGCGAGCaaGUGGgCAAa -3'
miRNA:   3'- -GCUCG-GCCGU-------UUCGCUCG--CACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 35891 0.7 0.565987
Target:  5'- gGAGUCGGCGGcGGCG-GCGUGGg--- -3'
miRNA:   3'- gCUCGGCCGUU-UCGCuCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 95657 0.7 0.576204
Target:  5'- gGAGCCuGCGcGGCGGGC-UGGUCu- -3'
miRNA:   3'- gCUCGGcCGUuUCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 108039 0.7 0.586463
Target:  5'- -cGGCCGGCGGGGCGcGCGcGG-CAAa -3'
miRNA:   3'- gcUCGGCCGUUUCGCuCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 5226 0.7 0.586463
Target:  5'- -cGGCCGGCGGGGCGcGCGcGG-CAAa -3'
miRNA:   3'- gcUCGGCCGUUUCGCuCGCaCCaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.