miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 116977 0.7 0.596755
Target:  5'- uGGGCCcGCuGGGGCGAGCGUGGc--- -3'
miRNA:   3'- gCUCGGcCG-UUUCGCUCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 3806 0.7 0.611207
Target:  5'- gCGuGCCGGCAcggggcgucggccGCGAGCGUGG-CGu -3'
miRNA:   3'- -GCuCGGCCGUuu-----------CGCUCGCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 43972 0.69 0.616378
Target:  5'- aCGAGCUGGaucuauaUAAGGCGcGCGUGGcCAGc -3'
miRNA:   3'- -GCUCGGCC-------GUUUCGCuCGCACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 134171 0.69 0.627761
Target:  5'- gCGGGCCGGCGcauagacgcccGGCGcAGCGUGGa--- -3'
miRNA:   3'- -GCUCGGCCGUu----------UCGC-UCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 14207 0.69 0.657765
Target:  5'- gGGGCUGGCGgucAGGCcggccggGGGCGUGGUgAGg -3'
miRNA:   3'- gCUCGGCCGU---UUCG-------CUCGCACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 111315 0.69 0.657765
Target:  5'- gGGGCCGuGCGcgcgcugGAccGCGAGCaGUGGUCGGu -3'
miRNA:   3'- gCUCGGC-CGU-------UU--CGCUCG-CACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 46602 0.69 0.658797
Target:  5'- --cGCCGGCGcGGCcucgcggcgcacGAGCGUGGUgAAg -3'
miRNA:   3'- gcuCGGCCGUuUCG------------CUCGCACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 95935 0.69 0.66808
Target:  5'- uGAGcCCGGCGccggaacgcuggcGGGCGAGCGUGaGcgCAGc -3'
miRNA:   3'- gCUC-GGCCGU-------------UUCGCUCGCAC-Ca-GUU- -5'
6387 5' -57.2 NC_001847.1 + 41895 0.69 0.66911
Target:  5'- --cGCgCGGCGAGGCaGAG-GUGGUCGg -3'
miRNA:   3'- gcuCG-GCCGUUUCG-CUCgCACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 60250 0.68 0.679392
Target:  5'- -uAGCaCGGCGccgacuucgcAGGCGcuuGCGUGGUCAAu -3'
miRNA:   3'- gcUCG-GCCGU----------UUCGCu--CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 134646 0.68 0.679392
Target:  5'- gCGGGCCGGCAgcAGGCGcggaGGCGcGGgCAc -3'
miRNA:   3'- -GCUCGGCCGU--UUCGC----UCGCaCCaGUu -5'
6387 5' -57.2 NC_001847.1 + 65107 0.68 0.679392
Target:  5'- -aGGCCGcGCucAGCGAGCGccGGUUAAu -3'
miRNA:   3'- gcUCGGC-CGuuUCGCUCGCa-CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 39184 0.68 0.679392
Target:  5'- uCGAgGCUcaGGCccugGGAGCGGGCGaUGGUCAu -3'
miRNA:   3'- -GCU-CGG--CCG----UUUCGCUCGC-ACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 73532 0.68 0.686567
Target:  5'- uGAGCCGGCuGAuugcggaggugggcGCGGGCGU-GUCGc -3'
miRNA:   3'- gCUCGGCCGuUU--------------CGCUCGCAcCAGUu -5'
6387 5' -57.2 NC_001847.1 + 19267 0.68 0.699829
Target:  5'- gCGAGCCGGCGGcgcAGCGucuguGCGgcgGGcCGc -3'
miRNA:   3'- -GCUCGGCCGUU---UCGCu----CGCa--CCaGUu -5'
6387 5' -57.2 NC_001847.1 + 54811 0.68 0.709964
Target:  5'- cCGcGCUGGCGAGcGCGGGCacgGUGGUgGAc -3'
miRNA:   3'- -GCuCGGCCGUUU-CGCUCG---CACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 67208 0.68 0.720031
Target:  5'- cCGuGCCGaGC--GGCGGGCGcgcGGUCGAa -3'
miRNA:   3'- -GCuCGGC-CGuuUCGCUCGCa--CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 120507 0.68 0.720031
Target:  5'- gCGAG-CGGCGc-GCGAGCGccgcGGUCGAa -3'
miRNA:   3'- -GCUCgGCCGUuuCGCUCGCa---CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 87843 0.68 0.720031
Target:  5'- --cGCCGGCGGGcgugauggcccGCGGGCcuGUGGUCGc -3'
miRNA:   3'- gcuCGGCCGUUU-----------CGCUCG--CACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 93762 0.68 0.720031
Target:  5'- gGAG-CGGCuGAGCGAGCGUGa---- -3'
miRNA:   3'- gCUCgGCCGuUUCGCUCGCACcaguu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.