Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 32647 | 0.67 | 0.739926 |
Target: 5'- aCGAGCUGG-AGGGCGAG-GUGGaCGg -3' miRNA: 3'- -GCUCGGCCgUUUCGCUCgCACCaGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 12369 | 0.67 | 0.739926 |
Target: 5'- gGAGCguCGGCGgcugcggccucgGGGCGcGUGUGGUCGGu -3' miRNA: 3'- gCUCG--GCCGU------------UUCGCuCGCACCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 126202 | 0.67 | 0.749734 |
Target: 5'- gGGGCUGGguGGGCGgagcucacuuGGCGgGGUCGu -3' miRNA: 3'- gCUCGGCCguUUCGC----------UCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 14843 | 0.67 | 0.749734 |
Target: 5'- -cAGCCGGCcccgcagcGCGAGCGUugcgucGGUCGGg -3' miRNA: 3'- gcUCGGCCGuuu-----CGCUCGCA------CCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 23389 | 0.67 | 0.749734 |
Target: 5'- gGGGCUGGguGGGCGgagcucacuuGGCGgGGUCGu -3' miRNA: 3'- gCUCGGCCguUUCGC----------UCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 44811 | 0.67 | 0.753628 |
Target: 5'- cCGAGCgCGGCAccGCGccccagucggcaaugGGCGcGGUCGc -3' miRNA: 3'- -GCUCG-GCCGUuuCGC---------------UCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 57159 | 0.67 | 0.759436 |
Target: 5'- aCGAGCUgGGCGAGGgGcGCGUGuUCAu -3' miRNA: 3'- -GCUCGG-CCGUUUCgCuCGCACcAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 87939 | 0.67 | 0.759436 |
Target: 5'- -cGGCCGcGCAcgcGGUGAGCGUGuUCAAa -3' miRNA: 3'- gcUCGGC-CGUu--UCGCUCGCACcAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 75491 | 0.67 | 0.759436 |
Target: 5'- aCGGGCgGGC---GCGAGCG-GGcUCAAa -3' miRNA: 3'- -GCUCGgCCGuuuCGCUCGCaCC-AGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 82305 | 0.67 | 0.759436 |
Target: 5'- cCGGGgCGGgAGAauGCGGGCGgGGUCGc -3' miRNA: 3'- -GCUCgGCCgUUU--CGCUCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 117430 | 0.67 | 0.759436 |
Target: 5'- cCGAGCCGcuguacguGCAcuGCG-GCGUGGcCGAc -3' miRNA: 3'- -GCUCGGC--------CGUuuCGCuCGCACCaGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 50168 | 0.67 | 0.759436 |
Target: 5'- uCGAGgCGGCcauGAGCacGAGCGUGuUCGAc -3' miRNA: 3'- -GCUCgGCCGu--UUCG--CUCGCACcAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 33114 | 0.67 | 0.759436 |
Target: 5'- uGGGCCGGgGGccccguaccugcGGCGGGUGguggagugGGUCGAg -3' miRNA: 3'- gCUCGGCCgUU------------UCGCUCGCa-------CCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 109231 | 0.67 | 0.76807 |
Target: 5'- gCGGGUCGGCGggcgaaagacaaaAAGCcAGCG-GGUCGg -3' miRNA: 3'- -GCUCGGCCGU-------------UUCGcUCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 56893 | 0.67 | 0.769023 |
Target: 5'- --cGCCGGCGAcggcgacgccGGCGGGCG-GGUg-- -3' miRNA: 3'- gcuCGGCCGUU----------UCGCUCGCaCCAguu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 116682 | 0.67 | 0.778485 |
Target: 5'- uGGGuCCGGCGcuGCGGGCGcGG-CAc -3' miRNA: 3'- gCUC-GGCCGUuuCGCUCGCaCCaGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 24756 | 0.67 | 0.778485 |
Target: 5'- -cAGCCGGCugagguGCGAcGCGcGGUCGu -3' miRNA: 3'- gcUCGGCCGuuu---CGCU-CGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 125445 | 0.67 | 0.778485 |
Target: 5'- gCGuGGCUGGCcgGAGGaCGGGCG-GGUCGg -3' miRNA: 3'- -GC-UCGGCCG--UUUC-GCUCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 43439 | 0.66 | 0.787813 |
Target: 5'- -uGGCCGGCGucGCGAcccggggcgacgGCGcGGUCGc -3' miRNA: 3'- gcUCGGCCGUuuCGCU------------CGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 78872 | 0.66 | 0.787813 |
Target: 5'- -cAGCUGGCGccGGGCGuGUgGUGGUCGu -3' miRNA: 3'- gcUCGGCCGU--UUCGCuCG-CACCAGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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