Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 125211 | 0.66 | 0.796997 |
Target: 5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3' miRNA: 3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 52126 | 0.66 | 0.796997 |
Target: 5'- gCGGGCCGGCGGcgccccAGCGgaccgacgaGGCcGUGGcCAGg -3' miRNA: 3'- -GCUCGGCCGUU------UCGC---------UCG-CACCaGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 22398 | 0.66 | 0.796997 |
Target: 5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3' miRNA: 3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 63438 | 0.66 | 0.809597 |
Target: 5'- gCGGGCCGGCGcaccGcgcagacgcggacgcGGCGGGCcUGGUUg- -3' miRNA: 3'- -GCUCGGCCGU----U---------------UCGCUCGcACCAGuu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 37478 | 0.66 | 0.8149 |
Target: 5'- cCGGGcCCGGCcuGGC-AGCGgcgGGUCu- -3' miRNA: 3'- -GCUC-GGCCGuuUCGcUCGCa--CCAGuu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 22474 | 0.66 | 0.8149 |
Target: 5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3' miRNA: 3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 115772 | 0.66 | 0.8149 |
Target: 5'- gGAGCCGGCucGGCcaGAGCGU--UCGc -3' miRNA: 3'- gCUCGGCCGuuUCG--CUCGCAccAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 125287 | 0.66 | 0.8149 |
Target: 5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3' miRNA: 3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 26749 | 0.66 | 0.822739 |
Target: 5'- uGGGCCGuaGAGcGCGGGUGcgcggccUGGUCAGu -3' miRNA: 3'- gCUCGGCcgUUU-CGCUCGC-------ACCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 16847 | 0.66 | 0.823601 |
Target: 5'- uCGGGgCGGCGcucgAGGCGAGCG-GGcUCc- -3' miRNA: 3'- -GCUCgGCCGU----UUCGCUCGCaCC-AGuu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 3287 | 0.66 | 0.832124 |
Target: 5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3' miRNA: 3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 37324 | 0.66 | 0.832124 |
Target: 5'- gCGcGCCGaGCAcAGCGcuGGCGUgcGGUCAu -3' miRNA: 3'- -GCuCGGC-CGUuUCGC--UCGCA--CCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 106100 | 0.66 | 0.832124 |
Target: 5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3' miRNA: 3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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