miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 3287 0.66 0.832124
Target:  5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3'
miRNA:   3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5'
6387 5' -57.2 NC_001847.1 + 3806 0.7 0.611207
Target:  5'- gCGuGCCGGCAcggggcgucggccGCGAGCGUGG-CGu -3'
miRNA:   3'- -GCuCGGCCGUuu-----------CGCUCGCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 5226 0.7 0.586463
Target:  5'- -cGGCCGGCGGGGCGcGCGcGG-CAAa -3'
miRNA:   3'- gcUCGGCCGUUUCGCuCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 12369 0.67 0.739926
Target:  5'- gGAGCguCGGCGgcugcggccucgGGGCGcGUGUGGUCGGu -3'
miRNA:   3'- gCUCG--GCCGU------------UUCGCuCGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 13984 0.71 0.525652
Target:  5'- -uGGCCGGC-AAGCG-GCG-GGUCAu -3'
miRNA:   3'- gcUCGGCCGuUUCGCuCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 14207 0.69 0.657765
Target:  5'- gGGGCUGGCGgucAGGCcggccggGGGCGUGGUgAGg -3'
miRNA:   3'- gCUCGGCCGU---UUCG-------CUCGCACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 14843 0.67 0.749734
Target:  5'- -cAGCCGGCcccgcagcGCGAGCGUugcgucGGUCGGg -3'
miRNA:   3'- gcUCGGCCGuuu-----CGCUCGCA------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 15420 0.73 0.430427
Target:  5'- gGAGCgCGGCAcGGCGAGC-UGGUUu- -3'
miRNA:   3'- gCUCG-GCCGUuUCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 16847 0.66 0.823601
Target:  5'- uCGGGgCGGCGcucgAGGCGAGCG-GGcUCc- -3'
miRNA:   3'- -GCUCgGCCGU----UUCGCUCGCaCC-AGuu -5'
6387 5' -57.2 NC_001847.1 + 19267 0.68 0.699829
Target:  5'- gCGAGCCGGCGGcgcAGCGucuguGCGgcgGGcCGc -3'
miRNA:   3'- -GCUCGGCCGUU---UCGCu----CGCa--CCaGUu -5'
6387 5' -57.2 NC_001847.1 + 19895 0.73 0.40387
Target:  5'- ---aCCGGCGGAGUGggucAGCGUGGUCGAc -3'
miRNA:   3'- gcucGGCCGUUUCGC----UCGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 21423 0.82 0.11586
Target:  5'- uCGGGCCGGCcGAGCGAGCG-GGcCAAa -3'
miRNA:   3'- -GCUCGGCCGuUUCGCUCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 22398 0.66 0.796997
Target:  5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3'
miRNA:   3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5'
6387 5' -57.2 NC_001847.1 + 22474 0.66 0.8149
Target:  5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3'
miRNA:   3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5'
6387 5' -57.2 NC_001847.1 + 23389 0.67 0.749734
Target:  5'- gGGGCUGGguGGGCGgagcucacuuGGCGgGGUCGu -3'
miRNA:   3'- gCUCGGCCguUUCGC----------UCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 24756 0.67 0.778485
Target:  5'- -cAGCCGGCugagguGCGAcGCGcGGUCGu -3'
miRNA:   3'- gcUCGGCCGuuu---CGCU-CGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 26749 0.66 0.822739
Target:  5'- uGGGCCGuaGAGcGCGGGUGcgcggccUGGUCAGu -3'
miRNA:   3'- gCUCGGCcgUUU-CGCUCGC-------ACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 31736 0.74 0.386751
Target:  5'- aCGAGCCcuauGUcGAGCGGcGCGUGGUCAGc -3'
miRNA:   3'- -GCUCGGc---CGuUUCGCU-CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 32647 0.67 0.739926
Target:  5'- aCGAGCUGG-AGGGCGAG-GUGGaCGg -3'
miRNA:   3'- -GCUCGGCCgUUUCGCUCgCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 33114 0.67 0.759436
Target:  5'- uGGGCCGGgGGccccguaccugcGGCGGGUGguggagugGGUCGAg -3'
miRNA:   3'- gCUCGGCCgUU------------UCGCUCGCa-------CCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.