miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 35891 0.7 0.565987
Target:  5'- gGAGUCGGCGGcGGCG-GCGUGGg--- -3'
miRNA:   3'- gCUCGGCCGUU-UCGCuCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 37324 0.66 0.832124
Target:  5'- gCGcGCCGaGCAcAGCGcuGGCGUgcGGUCAu -3'
miRNA:   3'- -GCuCGGC-CGUuUCGC--UCGCA--CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 37478 0.66 0.8149
Target:  5'- cCGGGcCCGGCcuGGC-AGCGgcgGGUCu- -3'
miRNA:   3'- -GCUC-GGCCGuuUCGcUCGCa--CCAGuu -5'
6387 5' -57.2 NC_001847.1 + 39184 0.68 0.679392
Target:  5'- uCGAgGCUcaGGCccugGGAGCGGGCGaUGGUCAu -3'
miRNA:   3'- -GCU-CGG--CCG----UUUCGCUCGC-ACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 41895 0.69 0.66911
Target:  5'- --cGCgCGGCGAGGCaGAG-GUGGUCGg -3'
miRNA:   3'- gcuCG-GCCGUUUCG-CUCgCACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 43439 0.66 0.787813
Target:  5'- -uGGCCGGCGucGCGAcccggggcgacgGCGcGGUCGc -3'
miRNA:   3'- gcUCGGCCGUuuCGCU------------CGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 43972 0.69 0.616378
Target:  5'- aCGAGCUGGaucuauaUAAGGCGcGCGUGGcCAGc -3'
miRNA:   3'- -GCUCGGCC-------GUUUCGCuCGCACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 44811 0.67 0.753628
Target:  5'- cCGAGCgCGGCAccGCGccccagucggcaaugGGCGcGGUCGc -3'
miRNA:   3'- -GCUCG-GCCGUuuCGC---------------UCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 46602 0.69 0.658797
Target:  5'- --cGCCGGCGcGGCcucgcggcgcacGAGCGUGGUgAAg -3'
miRNA:   3'- gcuCGGCCGUuUCG------------CUCGCACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 50168 0.67 0.759436
Target:  5'- uCGAGgCGGCcauGAGCacGAGCGUGuUCGAc -3'
miRNA:   3'- -GCUCgGCCGu--UUCG--CUCGCACcAGUU- -5'
6387 5' -57.2 NC_001847.1 + 52126 0.66 0.796997
Target:  5'- gCGGGCCGGCGGcgccccAGCGgaccgacgaGGCcGUGGcCAGg -3'
miRNA:   3'- -GCUCGGCCGUU------UCGC---------UCG-CACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 54811 0.68 0.709964
Target:  5'- cCGcGCUGGCGAGcGCGGGCacgGUGGUgGAc -3'
miRNA:   3'- -GCuCGGCCGUUU-CGCUCG---CACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 56893 0.67 0.769023
Target:  5'- --cGCCGGCGAcggcgacgccGGCGGGCG-GGUg-- -3'
miRNA:   3'- gcuCGGCCGUU----------UCGCUCGCaCCAguu -5'
6387 5' -57.2 NC_001847.1 + 57159 0.67 0.759436
Target:  5'- aCGAGCUgGGCGAGGgGcGCGUGuUCAu -3'
miRNA:   3'- -GCUCGG-CCGUUUCgCuCGCACcAGUu -5'
6387 5' -57.2 NC_001847.1 + 59400 0.72 0.476865
Target:  5'- gGAGCCGGCGGAG-GcGCGgcGGUCAu -3'
miRNA:   3'- gCUCGGCCGUUUCgCuCGCa-CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 59928 0.72 0.493214
Target:  5'- aGAGCCGGCGgaagggcgccacgcAAGCGuccGGCGUGG-CGu -3'
miRNA:   3'- gCUCGGCCGU--------------UUCGC---UCGCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 60250 0.68 0.679392
Target:  5'- -uAGCaCGGCGccgacuucgcAGGCGcuuGCGUGGUCAAu -3'
miRNA:   3'- gcUCG-GCCGU----------UUCGCu--CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 63438 0.66 0.809597
Target:  5'- gCGGGCCGGCGcaccGcgcagacgcggacgcGGCGGGCcUGGUUg- -3'
miRNA:   3'- -GCUCGGCCGU----U---------------UCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 65107 0.68 0.679392
Target:  5'- -aGGCCGcGCucAGCGAGCGccGGUUAAu -3'
miRNA:   3'- gcUCGGC-CGuuUCGCUCGCa-CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 67208 0.68 0.720031
Target:  5'- cCGuGCCGaGC--GGCGGGCGcgcGGUCGAa -3'
miRNA:   3'- -GCuCGGC-CGuuUCGCUCGCa--CCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.