Results 41 - 60 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 71446 | 0.73 | 0.439504 |
Target: 5'- aCGGGCgCGGCuuuGAGCuGAGCGUGGa--- -3' miRNA: 3'- -GCUCG-GCCGu--UUCG-CUCGCACCaguu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 73532 | 0.68 | 0.686567 |
Target: 5'- uGAGCCGGCuGAuugcggaggugggcGCGGGCGU-GUCGc -3' miRNA: 3'- gCUCGGCCGuUU--------------CGCUCGCAcCAGUu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 75491 | 0.67 | 0.759436 |
Target: 5'- aCGGGCgGGC---GCGAGCG-GGcUCAAa -3' miRNA: 3'- -GCUCGgCCGuuuCGCUCGCaCC-AGUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 75650 | 0.71 | 0.549739 |
Target: 5'- gGAGCCGGaggcGCGGGCGUugcucgugaaggccgGGUCGAu -3' miRNA: 3'- gCUCGGCCguuuCGCUCGCA---------------CCAGUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 78872 | 0.66 | 0.787813 |
Target: 5'- -cAGCUGGCGccGGGCGuGUgGUGGUCGu -3' miRNA: 3'- gcUCGGCCGU--UUCGCuCG-CACCAGUu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 81592 | 0.7 | 0.564967 |
Target: 5'- gCGAGCgCGGCGucgguugAGGCGAGCaaGUGGgCAAa -3' miRNA: 3'- -GCUCG-GCCGU-------UUCGCUCG--CACCaGUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 82305 | 0.67 | 0.759436 |
Target: 5'- cCGGGgCGGgAGAauGCGGGCGgGGUCGc -3' miRNA: 3'- -GCUCgGCCgUUU--CGCUCGCaCCAGUu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 87843 | 0.68 | 0.720031 |
Target: 5'- --cGCCGGCGGGcgugauggcccGCGGGCcuGUGGUCGc -3' miRNA: 3'- gcuCGGCCGUUU-----------CGCUCG--CACCAGUu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 87939 | 0.67 | 0.759436 |
Target: 5'- -cGGCCGcGCAcgcGGUGAGCGUGuUCAAa -3' miRNA: 3'- gcUCGGC-CGUu--UCGCUCGCACcAGUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 93762 | 0.68 | 0.720031 |
Target: 5'- gGAG-CGGCuGAGCGAGCGUGa---- -3' miRNA: 3'- gCUCgGCCGuUUCGCUCGCACcaguu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 95657 | 0.7 | 0.576204 |
Target: 5'- gGAGCCuGCGcGGCGGGC-UGGUCu- -3' miRNA: 3'- gCUCGGcCGUuUCGCUCGcACCAGuu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 95935 | 0.69 | 0.66808 |
Target: 5'- uGAGcCCGGCGccggaacgcuggcGGGCGAGCGUGaGcgCAGc -3' miRNA: 3'- gCUC-GGCCGU-------------UUCGCUCGCAC-Ca-GUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 99747 | 1.06 | 0.00253 |
Target: 5'- cCGAGCCGGCAAAGCGAGCGUGGUCAAa -3' miRNA: 3'- -GCUCGGCCGUUUCGCUCGCACCAGUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 101090 | 0.76 | 0.294494 |
Target: 5'- cCGGGUCGGCGGGGCGGGCG-GG-CGc -3' miRNA: 3'- -GCUCGGCCGUUUCGCUCGCaCCaGUu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 106100 | 0.66 | 0.832124 |
Target: 5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3' miRNA: 3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 108039 | 0.7 | 0.586463 |
Target: 5'- -cGGCCGGCGGGGCGcGCGcGG-CAAa -3' miRNA: 3'- gcUCGGCCGUUUCGCuCGCaCCaGUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 109231 | 0.67 | 0.76807 |
Target: 5'- gCGGGUCGGCGggcgaaagacaaaAAGCcAGCG-GGUCGg -3' miRNA: 3'- -GCUCGGCCGU-------------UUCGcUCGCaCCAGUu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 111315 | 0.69 | 0.657765 |
Target: 5'- gGGGCCGuGCGcgcgcugGAccGCGAGCaGUGGUCGGu -3' miRNA: 3'- gCUCGGC-CGU-------UU--CGCUCG-CACCAGUU- -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 115772 | 0.66 | 0.8149 |
Target: 5'- gGAGCCGGCucGGCcaGAGCGU--UCGc -3' miRNA: 3'- gCUCGGCCGuuUCG--CUCGCAccAGUu -5' |
|||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 116682 | 0.67 | 0.778485 |
Target: 5'- uGGGuCCGGCGcuGCGGGCGcGG-CAc -3' miRNA: 3'- gCUC-GGCCGUuuCGCUCGCaCCaGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home